Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86795 * 120.00092 * 2 1 4 4 H 1.48501 * 109.47194 * 275.39765 * 3 2 1 5 5 H 1.48502 * 109.47360 * 35.39862 * 3 2 1 6 6 H 1.48500 * 109.47290 * 155.39672 * 3 2 1 7 7 C 1.39955 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99458 * 342.25192 * 7 2 1 9 9 C 1.41394 * 119.99988 * 162.24438 * 7 2 1 10 10 C 1.40733 * 120.24799 * 329.79441 * 9 7 2 11 11 C 1.37601 * 119.74660 * 180.27629 * 10 9 7 12 12 C 1.38654 * 120.24623 * 359.69476 * 11 10 9 13 13 C 1.38614 * 120.50443 * 0.02975 * 12 11 10 14 14 C 1.37645 * 120.24591 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.12813 * 180.02562 * 14 13 12 16 16 H 1.08992 * 109.46673 * 214.99581 * 15 14 13 17 17 F 1.39904 * 109.46827 * 334.99773 * 15 14 13 18 18 C 1.53001 * 109.47135 * 94.99421 * 15 14 13 19 19 F 1.39904 * 109.46975 * 60.00444 * 18 15 14 20 20 F 1.39907 * 109.46839 * 180.02562 * 18 15 14 21 21 H 0.96993 * 120.00085 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.12617 * 359.97438 * 10 9 7 23 23 H 1.07997 * 119.87765 * 179.72075 * 11 10 9 24 24 H 1.07998 * 119.75096 * 180.02562 * 12 11 10 25 25 H 1.07997 * 119.88111 * 179.97438 * 13 12 11 26 26 H 1.08996 * 109.47051 * 299.99947 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3757 2.1122 -1.3939 5 1 1.5014 2.6171 0.8110 6 1 3.5921 1.4099 0.5829 7 6 2.0080 -1.2120 -0.0005 8 1 1.5065 -2.1252 0.2842 9 6 3.3714 -1.2410 -0.3740 10 6 3.8718 -0.3103 -1.3035 11 6 5.1992 -0.3514 -1.6639 12 6 6.0441 -1.3011 -1.1101 13 6 5.5635 -2.2191 -0.1893 14 6 4.2393 -2.1965 0.1857 15 6 3.7198 -3.1954 1.1874 16 1 2.6961 -3.4681 0.9310 17 9 4.5261 -4.3386 1.1672 18 6 3.7476 -2.5764 2.5864 19 9 2.9413 -1.4333 2.6066 20 9 3.2658 -3.5040 3.5163 21 1 -0.4850 0.8400 0.0004 22 1 3.2154 0.4303 -1.7360 23 1 5.5844 0.3589 -2.3804 24 1 7.0846 -1.3259 -1.3983 25 1 6.2304 -2.9547 0.2354 26 1 4.7712 -2.3037 2.8427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144342458.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = -140.648428 kcal Electronic energy + Delta-G solvation = -16282.393706 eV Core-core repulsion = 13103.481375 eV Total energy + Delta-G solvation = -3178.912330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.47696 -47.18683 -46.26234 -37.99566 -33.73544 -31.93553 -30.45942 -27.89587 -25.19654 -23.05318 -21.38414 -19.97773 -17.54743 -17.25912 -16.83169 -16.49983 -15.79765 -15.08098 -14.79376 -14.00496 -13.64152 -13.47053 -13.24077 -12.99623 -12.70375 -12.63577 -12.14500 -11.86604 -11.71425 -11.26251 -10.92812 -10.82575 -10.57720 -9.99616 -9.87847 -9.59621 -9.24509 -7.85459 -7.74286 -7.05710 -4.62497 2.32365 2.55197 3.04924 3.15649 3.26559 3.90597 4.15556 4.42684 4.63004 4.97512 5.06396 5.33597 5.52930 5.80536 5.88036 5.99915 6.08621 6.39074 6.56449 6.77344 7.04013 7.20836 7.46340 7.55626 7.69613 7.94280 8.19663 8.45899 8.65191 9.95586 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.014527 C = 0.010276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.168061 B = 1926.968290 C = 2724.256313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.090 3.910 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.434 4.434 8 H 0.092 0.908 9 C 0.114 3.886 10 C -0.234 4.234 11 C -0.067 4.067 12 C -0.249 4.249 13 C -0.051 4.051 14 C -0.246 4.246 15 C 0.118 3.882 16 H 0.108 0.892 17 F -0.205 7.205 18 C 0.247 3.753 19 F -0.173 7.173 20 F -0.212 7.212 21 H 0.287 0.713 22 H 0.104 0.896 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 -0.686 2.066 6.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.131 4.131 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.165 1.165 7 C -0.462 4.462 8 H 0.110 0.890 9 C 0.111 3.889 10 C -0.253 4.253 11 C -0.086 4.086 12 C -0.268 4.268 13 C -0.069 4.069 14 C -0.247 4.247 15 C 0.081 3.919 16 H 0.126 0.874 17 F -0.186 7.186 18 C 0.193 3.807 19 F -0.154 7.154 20 F -0.194 7.194 21 H 0.098 0.902 22 H 0.122 0.878 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.543 -0.624 2.117 5.966 hybrid contribution 0.136 0.718 0.004 0.731 sum 5.679 0.094 2.120 6.062 Atomic orbital electron populations 1.69669 1.08165 1.30555 1.33692 1.26112 0.94669 1.01763 0.90540 0.86318 0.81564 0.79672 0.78737 1.19685 1.21629 1.16505 1.19455 0.92667 0.96064 1.37979 0.88969 1.17370 0.92507 0.90044 0.89007 1.21030 0.95695 1.04652 1.03936 1.20700 0.93763 0.96700 0.97415 1.20352 0.98484 1.01838 1.06164 1.20450 0.94055 0.96496 0.95917 1.19458 0.94409 1.04956 1.05926 1.20962 0.95752 0.82156 0.92989 0.87447 1.92766 1.76237 1.52234 1.97339 1.22451 0.93050 0.76956 0.88246 1.93093 1.75858 1.49827 1.96671 1.92953 1.90625 1.67288 1.68520 0.90208 0.87841 0.88583 0.88529 0.88093 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.55 13.93 55.55 0.77 -19.77 15 2 C 0.09 2.27 5.41 -17.34 -0.09 2.17 15 3 Si 0.91 20.30 24.51 -169.99 -4.17 16.13 15 4 H -0.27 -5.81 6.72 56.52 0.38 -5.43 15 5 H -0.29 -6.26 7.11 56.52 0.40 -5.85 15 6 H -0.24 -5.53 6.85 56.52 0.39 -5.14 15 7 C -0.43 -11.07 7.27 -37.74 -0.27 -11.34 15 8 H 0.09 2.45 6.63 -52.49 -0.35 2.10 15 9 C 0.11 2.75 4.91 -106.83 -0.52 2.22 15 10 C -0.23 -5.41 7.16 -38.87 -0.28 -5.69 15 11 C -0.07 -1.40 10.02 -39.66 -0.40 -1.80 15 12 C -0.25 -4.97 10.05 -39.29 -0.39 -5.36 15 13 C -0.05 -1.04 9.39 -39.66 -0.37 -1.41 15 14 C -0.25 -5.41 5.00 -103.91 -0.52 -5.92 15 15 C 0.12 2.37 3.37 -27.88 -0.09 2.28 15 16 H 0.11 2.24 6.51 -51.93 -0.34 1.90 15 17 F -0.21 -3.95 16.07 2.25 0.04 -3.91 15 18 C 0.25 4.65 5.07 37.16 0.19 4.84 15 19 F -0.17 -3.76 15.19 2.25 0.03 -3.73 15 20 F -0.21 -3.95 17.32 2.25 0.04 -3.91 15 21 H 0.29 6.72 8.30 -40.82 -0.34 6.38 15 22 H 0.10 2.38 4.75 -52.48 -0.25 2.13 15 23 H 0.10 1.72 8.06 -52.49 -0.42 1.29 15 24 H 0.10 1.67 8.06 -52.49 -0.42 1.24 15 25 H 0.10 1.84 7.47 -52.49 -0.39 1.45 15 26 H 0.11 1.70 8.14 -51.93 -0.42 1.28 15 LS Contribution 233.26 15.07 3.52 3.52 Total: -1.00 -26.05 233.26 -4.30 -30.35 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -1.77 Total: 1.35 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.76 Total: -20.02 kcal Atomic # 7 Polarization: -20.55 SS G_CDS: 0.77 Total: -19.77 kcal Atomic # 9 Polarization: -11.66 SS G_CDS: 0.11 Total: -11.55 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.17 Total: 16.13 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -26.05 -4.30 -30.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144342458.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.303 kcal (2) G-P(sol) polarization free energy of solvation -26.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds