Wall clock time and date at job start Mon Mar 30 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37649 * 119.85982 * 2 1 4 4 C 1.40710 * 119.79239 * 179.97438 * 3 2 1 5 5 C 1.41403 * 120.22788 * 179.97438 * 4 3 2 6 6 H 1.07990 * 120.00356 * 330.22939 * 5 4 3 7 7 C 1.39945 * 119.99319 * 150.23250 * 5 4 3 8 8 N 1.30830 * 119.99451 * 161.72847 * 7 5 4 9 9 Si 1.86798 * 120.00550 * 341.72155 * 7 5 4 10 10 H 1.48499 * 109.47111 * 95.41093 * 9 7 5 11 11 H 1.48500 * 109.47159 * 215.41384 * 9 7 5 12 12 H 1.48497 * 109.46881 * 335.41603 * 9 7 5 13 13 C 1.40689 * 119.53748 * 359.97438 * 4 3 2 14 14 C 1.37821 * 119.72636 * 0.02562 * 13 4 3 15 15 F 1.35095 * 119.90453 * 179.97438 * 14 13 4 16 16 C 1.38571 * 119.86247 * 179.71985 * 2 1 3 17 17 C 1.50698 * 119.76359 * 0.02562 * 16 2 1 18 18 F 1.39909 * 109.46985 * 299.99853 * 17 16 2 19 19 F 1.39897 * 109.47447 * 59.99774 * 17 16 2 20 20 H 1.08998 * 109.47045 * 90.00218 * 1 2 3 21 21 H 1.08995 * 109.47178 * 210.00153 * 1 2 3 22 22 H 1.09001 * 109.47177 * 330.00405 * 1 2 3 23 23 H 1.08001 * 120.10294 * 359.97438 * 3 2 1 24 24 H 0.97003 * 119.99927 * 180.02562 * 8 7 5 25 25 H 1.08006 * 120.14087 * 179.97438 * 13 4 3 26 26 H 1.08999 * 109.46867 * 179.97438 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1938 0.0000 4 6 3.5994 1.1921 0.0005 5 6 4.3127 2.4130 0.0000 6 1 3.8844 3.2885 -0.4651 7 6 5.5738 2.4867 0.6022 8 7 6.3827 3.4720 0.3077 9 14 6.1023 1.1787 1.8266 10 1 6.8986 0.1387 1.1270 11 1 6.9286 1.8022 2.8913 12 1 4.8995 0.5552 2.4347 13 6 4.2916 -0.0328 0.0016 14 6 3.5858 -1.2165 0.0016 15 9 4.2467 -2.3947 0.0021 16 6 2.1970 -1.2017 0.0059 17 6 1.4350 -2.5018 0.0116 18 9 0.6297 -2.5653 1.1540 19 9 0.6306 -2.5761 -1.1305 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6517 2.1287 -0.0004 24 1 7.2570 3.5229 0.7248 25 1 5.3715 -0.0454 0.0016 26 1 2.1379 -3.3349 0.0153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214958511.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:22 Heat of formation + Delta-G solvation = -159.025668 kcal Electronic energy + Delta-G solvation = -15960.249772 eV Core-core repulsion = 12780.540545 eV Total energy + Delta-G solvation = -3179.709227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.11973 -49.75739 -47.84435 -39.79792 -36.00586 -33.70588 -32.33277 -29.00035 -28.00366 -25.14781 -22.92720 -22.28272 -19.51913 -18.53065 -18.36117 -18.12526 -17.64340 -16.79390 -16.54170 -16.46203 -15.42844 -15.05637 -14.82126 -14.36666 -14.26665 -14.18832 -14.14417 -13.72155 -13.48550 -13.04816 -12.83045 -12.64709 -12.31587 -12.03323 -11.79589 -11.50762 -11.11994 -9.75979 -9.44289 -9.09272 -6.74715 0.31370 0.53953 1.20719 1.31054 1.41228 2.01858 2.27917 2.91773 3.16279 3.33536 3.38718 3.78444 4.06187 4.21517 4.36629 4.51787 4.62782 4.81357 4.82362 4.92324 5.15788 5.25576 5.44784 5.63797 5.66538 6.00387 6.15840 6.47024 6.59660 7.96511 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.037248 B = 0.009597 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.546007 B = 2916.877355 C = 3324.173403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.004 3.996 3 C -0.226 4.226 4 C 0.110 3.890 5 C -0.458 4.458 6 H 0.077 0.923 7 C 0.057 3.943 8 N -0.819 5.819 9 Si 0.954 3.046 10 H -0.261 1.261 11 H -0.266 1.266 12 H -0.254 1.254 13 C -0.299 4.299 14 C 0.164 3.836 15 F -0.147 7.147 16 C -0.338 4.338 17 C 0.333 3.667 18 F -0.207 7.207 19 F -0.207 7.207 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.123 0.877 24 H 0.302 0.698 25 H 0.113 0.887 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 -7.865 1.559 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.004 3.996 3 C -0.245 4.245 4 C 0.107 3.893 5 C -0.485 4.485 6 H 0.095 0.905 7 C -0.162 4.162 8 N -0.442 5.442 9 Si 0.777 3.223 10 H -0.186 1.186 11 H -0.192 1.192 12 H -0.178 1.178 13 C -0.319 4.319 14 C 0.145 3.855 15 F -0.126 7.126 16 C -0.340 4.340 17 C 0.279 3.721 18 F -0.188 7.188 19 F -0.189 7.189 20 H 0.100 0.900 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.141 0.859 24 H 0.113 0.887 25 H 0.130 0.870 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.310 -7.701 1.558 9.483 hybrid contribution 0.717 -0.171 0.247 0.778 sum -4.593 -7.872 1.805 9.291 Atomic orbital electron populations 1.20997 0.89404 1.03886 1.03233 1.19516 0.96690 0.91146 0.92266 1.21143 0.93061 0.97176 1.13105 1.17667 0.92884 0.91638 0.87125 1.19635 1.00308 0.96746 1.31828 0.90476 1.26799 0.94642 0.97661 0.97143 1.69679 1.08332 1.30765 1.35444 0.85632 0.79690 0.78356 0.78591 1.18636 1.19199 1.17820 1.20998 0.99181 0.91852 1.19857 1.17174 0.89301 0.80166 0.98890 1.91379 1.81387 1.45870 1.93950 1.19654 0.91549 0.95728 1.27094 1.19939 0.84021 0.97452 0.70662 1.92908 1.76553 1.97400 1.51929 1.92948 1.76638 1.97504 1.51766 0.90030 0.90883 0.90010 0.85934 0.88743 0.86960 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 8.97 71.24 0.64 -3.06 15 2 C 0.00 0.17 5.83 -19.92 -0.12 0.05 15 3 C -0.23 -9.82 9.43 22.73 0.21 -9.60 15 4 C 0.11 5.34 5.10 -21.30 -0.11 5.23 15 5 C -0.46 -23.75 9.57 23.46 0.22 -23.53 15 6 H 0.08 4.21 8.06 -2.92 -0.02 4.18 15 7 C 0.06 2.84 5.40 85.26 0.46 3.30 15 8 N -0.82 -41.38 13.93 21.83 0.30 -41.07 15 9 Si 0.95 40.54 24.52 68.60 1.68 42.22 15 10 H -0.26 -10.76 6.71 99.48 0.67 -10.10 15 11 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 12 H -0.25 -11.25 6.86 99.48 0.68 -10.56 15 13 C -0.30 -14.00 7.15 22.77 0.16 -13.84 15 14 C 0.16 7.01 7.23 22.33 0.16 7.17 15 15 F -0.15 -5.72 16.17 44.97 0.73 -4.99 15 16 C -0.34 -13.39 5.40 -19.63 -0.11 -13.50 15 17 C 0.33 10.96 4.92 71.24 0.35 11.31 15 18 F -0.21 -6.79 15.33 44.97 0.69 -6.10 15 19 F -0.21 -6.81 16.42 44.97 0.74 -6.07 15 20 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 21 H 0.07 2.22 5.47 -2.39 -0.01 2.21 15 22 H 0.08 2.26 8.08 -2.39 -0.02 2.24 15 23 H 0.12 4.95 8.06 -2.91 -0.02 4.92 15 24 H 0.30 13.57 8.30 -92.71 -0.77 12.80 15 25 H 0.11 5.26 4.73 -2.91 -0.01 5.25 15 26 H 0.13 3.64 7.10 -2.39 -0.02 3.63 15 Total: -1.00 -52.45 233.99 7.18 -45.27 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.16 Total: 7.20 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 1.88 Total: -36.46 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.30 Total: -41.07 kcal Atomic # 9 Polarization: -19.32 SS G_CDS: 2.16 Total: -17.16 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.68 Total: 42.22 kcal Total: -52.45 7.18 -45.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214958511.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.753 kcal (2) G-P(sol) polarization free energy of solvation -52.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds