Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47036 * 2 1 4 4 F 1.39905 * 109.47376 * 240.00014 * 2 1 3 5 5 C 1.50708 * 109.47211 * 119.99855 * 2 1 3 6 6 C 1.38709 * 119.76257 * 65.00051 * 5 2 1 7 7 C 1.38674 * 120.51272 * 179.74304 * 6 5 2 8 8 F 1.35105 * 119.97329 * 180.25863 * 7 6 5 9 9 C 1.38230 * 120.04280 * 0.27823 * 7 6 5 10 10 F 1.35104 * 120.22700 * 179.97438 * 9 7 6 11 11 C 1.40921 * 119.53607 * 359.97438 * 9 7 6 12 12 C 1.41301 * 120.25115 * 179.97438 * 11 9 7 13 13 H 1.08008 * 120.00108 * 330.11846 * 12 11 9 14 14 C 1.39930 * 120.00121 * 150.12348 * 12 11 9 15 15 N 1.30847 * 119.99930 * 161.77791 * 14 12 11 16 16 Si 1.86797 * 120.00117 * 341.77775 * 14 12 11 17 17 H 1.48501 * 109.47244 * 95.40448 * 16 14 12 18 18 H 1.48501 * 109.47373 * 215.40948 * 16 14 12 19 19 H 1.48497 * 109.47087 * 335.40592 * 16 14 12 20 20 C 1.36533 * 119.76499 * 245.26089 * 5 2 1 21 21 H 1.09001 * 109.47255 * 299.99873 * 1 2 3 22 22 H 1.08994 * 109.47414 * 60.00284 * 1 2 3 23 23 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.73962 * 0.02562 * 6 5 2 25 25 H 0.97001 * 119.99893 * 180.02562 * 15 14 12 26 26 H 1.08004 * 120.02924 * 359.96839 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2305 6 6 1.7821 -2.0649 1.3940 7 6 2.2417 -2.7352 2.5177 8 9 1.9962 -4.0558 2.6633 9 6 2.9503 -2.0531 3.4889 10 9 3.3994 -2.7023 4.5853 11 6 3.2011 -0.6758 3.3273 12 6 3.9235 0.0364 4.3109 13 1 3.8761 -0.2721 5.3449 14 6 4.7001 1.1415 3.9454 15 7 5.0749 2.0066 4.8527 16 14 5.2020 1.3818 2.1622 17 1 4.2397 2.2958 1.4960 18 1 6.5640 1.9707 2.1062 19 1 5.2011 0.0698 1.4667 20 6 2.7259 -0.0150 2.1790 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.2290 -2.6026 0.6382 25 1 5.6130 2.7729 4.5993 26 1 2.9135 1.0403 2.0461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214958854.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = -139.300956 kcal Electronic energy + Delta-G solvation = -15880.118918 eV Core-core repulsion = 12701.265018 eV Total energy + Delta-G solvation = -3178.853900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.35123 -47.29070 -47.27812 -37.99952 -34.13144 -32.43449 -30.43504 -28.49728 -25.63117 -23.23175 -22.03361 -20.17613 -17.88846 -16.80132 -16.57982 -15.88511 -15.44493 -15.21483 -14.73375 -14.65376 -14.61536 -13.84157 -13.70766 -12.96204 -12.60507 -12.44195 -12.26587 -12.08674 -11.89689 -11.56190 -11.04967 -10.83299 -10.71140 -10.34902 -10.05373 -9.97380 -9.45384 -7.95779 -7.72697 -7.26493 -4.82241 1.99917 2.13473 2.88742 3.02634 3.13253 3.73687 4.02407 4.80464 4.83691 4.97018 5.07722 5.24981 5.43076 5.57842 5.80997 5.93909 6.10598 6.12105 6.24997 6.42204 6.77393 6.84279 7.05159 7.17876 7.35493 7.70330 8.01743 8.21850 8.40026 9.73727 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.013829 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.290662 B = 2024.187214 C = 3074.061806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 H 0.085 0.915 4 F -0.213 7.213 5 C -0.065 4.065 6 C -0.241 4.241 7 C 0.105 3.895 8 F -0.151 7.151 9 C -0.042 4.042 10 F -0.146 7.146 11 C 0.082 3.918 12 C -0.422 4.422 13 H 0.101 0.899 14 C 0.085 3.915 15 N -0.784 5.784 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.239 1.239 20 C -0.209 4.209 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.292 0.708 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 0.205 -7.032 8.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.097 3.903 3 H 0.103 0.897 4 F -0.194 7.194 5 C -0.066 4.066 6 C -0.261 4.261 7 C 0.085 3.915 8 F -0.130 7.130 9 C -0.064 4.064 10 F -0.125 7.125 11 C 0.078 3.922 12 C -0.449 4.449 13 H 0.119 0.881 14 C -0.138 4.138 15 N -0.406 5.406 16 Si 0.732 3.268 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.162 1.162 20 C -0.229 4.229 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.135 0.865 25 H 0.103 0.897 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.261 0.354 -6.852 8.077 hybrid contribution 0.358 -0.134 -0.389 0.546 sum -3.903 0.219 -7.241 8.229 Atomic orbital electron populations 1.22338 0.93863 1.03697 1.02971 1.20378 0.94731 0.95098 0.80140 0.89691 1.92803 1.90428 1.83641 1.52533 1.19192 0.98715 0.93593 0.95091 1.19887 1.12490 0.94525 0.99236 1.17449 1.00686 0.77057 0.96337 1.91390 1.92892 1.32639 1.96035 1.17667 1.10174 0.90931 0.87593 1.91337 1.88237 1.81033 1.51853 1.17445 0.92941 0.88938 0.92916 1.19479 1.21670 1.07209 0.96534 0.88111 1.26225 0.93841 0.93016 1.00680 1.69669 1.25606 1.08363 1.36950 0.86354 0.77761 0.81276 0.81454 1.18992 1.20880 1.16184 1.20504 1.05941 0.99066 0.97345 0.90416 0.91837 0.91232 0.86456 0.89693 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.51 37.16 0.35 -1.93 15 2 C 0.13 2.21 4.16 -27.88 -0.12 2.09 15 3 H 0.09 1.29 7.85 -51.93 -0.41 0.89 15 4 F -0.21 -3.80 16.93 2.25 0.04 -3.76 15 5 C -0.07 -1.32 5.01 -105.06 -0.53 -1.84 15 6 C -0.24 -4.99 9.12 -39.25 -0.36 -5.34 15 7 C 0.10 2.37 7.30 -39.42 -0.29 2.09 15 8 F -0.15 -3.29 17.18 2.25 0.04 -3.26 15 9 C -0.04 -1.04 7.32 -38.57 -0.28 -1.33 15 10 F -0.15 -3.66 16.70 2.25 0.04 -3.62 15 11 C 0.08 2.02 5.11 -106.77 -0.55 1.47 15 12 C -0.42 -10.98 9.26 -37.79 -0.35 -11.33 15 13 H 0.10 2.79 7.98 -52.48 -0.42 2.38 15 14 C 0.08 2.08 5.40 -17.34 -0.09 1.98 15 15 N -0.78 -19.45 13.93 55.55 0.77 -18.68 15 16 Si 0.91 19.16 24.52 -169.99 -4.17 14.99 15 17 H -0.26 -5.20 6.71 56.52 0.38 -4.82 15 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 19 H -0.24 -5.29 6.86 56.52 0.39 -4.90 15 20 C -0.21 -4.64 6.73 -39.25 -0.26 -4.91 15 21 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.07 0.93 7.68 -51.93 -0.40 0.53 15 24 H 0.12 2.19 7.86 -52.49 -0.41 1.77 15 25 H 0.29 6.46 8.30 -40.82 -0.34 6.12 15 26 H 0.12 2.44 4.59 -52.48 -0.24 2.20 15 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -26.04 239.38 -4.04 -30.07 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -1.89 Total: -0.31 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -2.47 Total: -19.04 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.77 Total: -18.68 kcal Atomic # 9 Polarization: -10.75 SS G_CDS: 0.11 Total: -10.64 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.17 Total: 14.99 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.04 -4.04 -30.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214958854.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.229 kcal (2) G-P(sol) polarization free energy of solvation -26.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds