Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48495 * 109.47460 * 240.00183 * 3 2 1 5 5 H 1.48502 * 109.46803 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47006 * 119.99875 * 3 2 1 7 7 C 1.37879 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99299 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.38486 * 120.01136 * 95.52856 * 10 9 7 12 12 F 1.35107 * 120.02573 * 0.02562 * 11 10 9 13 13 C 1.38435 * 119.94772 * 179.72475 * 11 10 9 14 14 C 1.38211 * 119.97471 * 0.25529 * 13 11 10 15 15 C 1.38222 * 120.02824 * 359.97203 * 14 13 11 16 16 C 1.38173 * 120.01626 * 275.74024 * 10 9 7 17 17 C 1.50700 * 119.98445 * 359.97438 * 16 10 9 18 18 F 1.39901 * 109.47144 * 115.44276 * 17 16 10 19 19 F 1.39909 * 109.46827 * 235.43923 * 17 16 10 20 20 H 0.96993 * 120.00290 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47120 * 60.00150 * 9 7 2 22 22 H 1.08999 * 109.47222 * 300.00289 * 9 7 2 23 23 H 1.08007 * 120.01078 * 180.22813 * 13 11 10 24 24 H 1.08010 * 119.98851 * 180.02562 * 14 13 11 25 25 H 1.07998 * 119.97698 * 180.02562 * 15 14 13 26 26 H 1.08990 * 109.47191 * 355.43811 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.5936 -4.2467 1.1912 12 9 2.0699 -3.8079 2.3569 13 6 3.4889 -5.3025 1.1880 14 6 4.0233 -5.7511 -0.0051 15 6 3.6637 -5.1464 -1.1948 16 6 2.7696 -4.0917 -1.1928 17 6 2.3777 -3.4339 -2.4909 18 9 3.4973 -2.8143 -3.0563 19 9 1.8845 -4.4011 -3.3734 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 3.7701 -5.7752 2.1175 24 1 4.7216 -6.5751 -0.0079 25 1 4.0814 -5.4978 -2.1267 26 1 1.6063 -2.6876 -2.3016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231370538.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = -135.772071 kcal Electronic energy + Delta-G solvation = -15874.334192 eV Core-core repulsion = 12695.633316 eV Total energy + Delta-G solvation = -3178.700876 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.43573 -48.25673 -46.40338 -38.76698 -33.86658 -31.88490 -30.64259 -27.40703 -25.74481 -23.57723 -21.46455 -20.62055 -17.38136 -17.15254 -16.76966 -16.39653 -15.50552 -15.35180 -15.20547 -14.92225 -14.51681 -13.38747 -13.10443 -12.82032 -12.72387 -12.55121 -12.43315 -11.90034 -11.68201 -11.36279 -11.29655 -10.88624 -10.68586 -10.19655 -9.75641 -9.60611 -8.62240 -8.54435 -8.07659 -6.17877 -4.24353 1.37812 1.64242 3.27875 3.31624 3.35370 3.86461 4.18302 4.35823 4.77585 4.82751 5.04309 5.16518 5.28212 5.40775 5.62122 5.65991 5.74984 6.08855 6.35957 6.49125 6.53527 6.70637 7.19053 7.29925 7.43049 7.76490 8.08060 8.80176 9.41729 10.91667 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.011116 C = 0.008613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.131851 B = 2518.229030 C = 3250.284709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.040 3.960 10 C -0.036 4.036 11 C 0.089 3.911 12 F -0.133 7.133 13 C -0.138 4.138 14 C -0.123 4.123 15 C -0.095 4.095 16 C -0.146 4.146 17 C 0.305 3.695 18 F -0.201 7.201 19 F -0.211 7.211 20 H 0.266 0.734 21 H 0.037 0.963 22 H 0.042 0.958 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.125 0.875 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 -8.960 -1.482 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.003 3.997 10 C -0.037 4.037 11 C 0.069 3.931 12 F -0.111 7.111 13 C -0.157 4.157 14 C -0.141 4.141 15 C -0.113 4.113 16 C -0.147 4.147 17 C 0.252 3.748 18 F -0.182 7.182 19 F -0.192 7.192 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.149 0.851 24 H 0.147 0.853 25 H 0.143 0.857 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.100 -8.824 -1.475 10.298 hybrid contribution 0.484 0.920 0.195 1.057 sum 5.583 -7.904 -1.280 9.762 Atomic orbital electron populations 1.69931 1.06066 1.27402 1.49290 1.24988 0.94910 0.99400 0.94559 0.86543 0.79596 0.82374 0.78998 1.19828 1.21049 1.20011 1.20926 0.93105 0.89305 1.52707 0.92186 1.18475 0.92529 0.89200 0.99454 1.20549 0.97071 0.95992 0.90136 1.17468 0.97614 0.96267 0.81717 1.91489 1.85071 1.88897 1.45658 1.21161 0.97998 0.97007 0.99526 1.20726 1.01137 1.00853 0.91402 1.20925 0.96605 0.95192 0.98589 1.19948 1.01377 0.99120 0.94232 1.20737 0.85937 0.86316 0.81809 1.92959 1.55583 1.83241 1.86436 1.92941 1.88027 1.66576 1.71700 0.92446 0.94533 0.93936 0.85133 0.85342 0.85712 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.57 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.52 -14.09 8.94 -34.44 -0.31 -14.40 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 9 C 0.04 0.98 4.29 -29.04 -0.12 0.86 15 10 C -0.04 -0.77 5.08 -104.55 -0.53 -1.30 15 11 C 0.09 1.74 7.24 -39.42 -0.29 1.45 15 12 F -0.13 -2.77 16.39 2.25 0.04 -2.73 15 13 C -0.14 -2.16 10.03 -39.52 -0.40 -2.56 15 14 C -0.12 -1.75 10.04 -39.60 -0.40 -2.15 15 15 C -0.09 -1.52 9.58 -39.58 -0.38 -1.90 15 16 C -0.15 -2.79 5.38 -104.64 -0.56 -3.35 15 17 C 0.31 5.82 5.25 36.01 0.19 6.01 15 18 F -0.20 -3.96 17.31 2.25 0.04 -3.92 15 19 F -0.21 -3.80 17.19 2.25 0.04 -3.77 15 20 H 0.27 7.17 8.31 -40.82 -0.34 6.84 15 21 H 0.04 0.91 6.34 -51.93 -0.33 0.58 15 22 H 0.04 1.13 7.49 -51.93 -0.39 0.74 15 23 H 0.13 1.66 8.06 -52.48 -0.42 1.23 15 24 H 0.13 1.36 8.06 -52.48 -0.42 0.94 15 25 H 0.12 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.14 2.86 5.43 -51.93 -0.28 2.58 15 LS Contribution 245.80 15.07 3.70 3.70 Total: -1.00 -28.40 245.80 -5.17 -33.57 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -1.81 Total: -2.72 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.89 Total: -15.67 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.74 Total: -24.57 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 0.11 Total: -10.42 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.40 -5.17 -33.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231370538.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.203 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds