Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38735 * 119.90027 * 2 1 4 4 C 1.37827 * 120.73415 * 179.97438 * 3 2 1 5 5 C 1.39141 * 120.06883 * 0.03207 * 4 3 2 6 6 O 1.34760 * 120.25277 * 179.97438 * 5 4 3 7 7 C 1.33164 * 123.61178 * 179.97438 * 6 5 4 8 8 C 1.38857 * 122.09563 * 359.97438 * 7 6 5 9 9 C 1.41103 * 120.87761 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00364 * 204.58510 * 9 8 7 11 11 C 1.39840 * 119.99744 * 24.57436 * 9 8 7 12 12 N 1.30959 * 120.00027 * 17.78502 * 11 9 8 13 13 Si 1.86801 * 119.99861 * 197.78210 * 11 9 8 14 14 H 1.48503 * 109.47270 * 94.68796 * 13 11 9 15 15 H 1.48496 * 109.47288 * 214.68840 * 13 11 9 16 16 H 1.48498 * 109.47169 * 334.68940 * 13 11 9 17 17 C 1.48054 * 118.25153 * 359.97438 * 8 7 6 18 18 O 1.21765 * 121.64115 * 180.02562 * 17 8 7 19 19 C 1.40430 * 119.08122 * 359.96515 * 5 4 3 20 20 C 1.37757 * 119.89685 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46822 * 90.00067 * 1 2 3 22 22 H 1.08994 * 109.47312 * 209.99755 * 1 2 3 23 23 H 1.09001 * 109.46985 * 330.00389 * 1 2 3 24 24 H 1.08001 * 119.63071 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.96685 * 179.74501 * 4 3 2 26 26 H 1.07999 * 118.95383 * 179.97438 * 7 6 5 27 27 H 0.97001 * 119.99533 * 180.02562 * 12 11 9 28 28 H 1.07997 * 120.20610 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2027 0.0000 4 6 3.5767 1.2227 0.0005 5 6 4.2913 0.0289 0.0004 6 8 5.6388 0.0441 0.0004 7 6 6.3885 -1.0564 0.0008 8 6 5.8317 -2.3284 0.0017 9 6 6.6506 -3.4775 0.0026 10 1 6.2716 -4.4112 -0.3858 11 6 7.9533 -3.4072 0.5063 12 7 8.3029 -2.4108 1.2810 13 14 9.1946 -4.7345 0.0742 14 1 9.9964 -4.2998 -1.0978 15 1 10.0955 -4.9656 1.2318 16 1 8.4790 -5.9932 -0.2552 17 6 4.3559 -2.4474 0.0029 18 8 3.8025 -3.5320 0.0043 19 6 3.5888 -1.1871 0.0005 20 6 2.1937 -1.1943 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6510 2.1335 0.0004 25 1 4.1025 2.1661 -0.0036 26 1 7.4639 -0.9565 0.0003 27 1 9.2066 -2.3619 1.6300 28 1 1.6553 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238539807.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = -57.736134 kcal Electronic energy + Delta-G solvation = -15167.317323 eV Core-core repulsion = 12533.857079 eV Total energy + Delta-G solvation = -2633.460243 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.06593 -39.39735 -39.00845 -36.10380 -33.17655 -32.78332 -31.65747 -28.17536 -27.41146 -24.77076 -23.76200 -22.84046 -19.93890 -19.68593 -18.32635 -17.41064 -16.78307 -16.54209 -16.33326 -15.50045 -15.24546 -14.94995 -14.91101 -14.66258 -14.37422 -13.81845 -13.36324 -13.09577 -12.89720 -12.77174 -12.56212 -12.40092 -12.07762 -11.69459 -11.25029 -10.49987 -10.12614 -9.81775 -9.03586 -8.71632 -6.32113 -0.25727 0.21988 0.86692 1.36000 1.38928 1.50683 2.05376 2.13149 2.21862 2.74518 3.19871 3.37391 3.71370 3.95623 4.24297 4.30422 4.32267 4.65301 4.77351 4.92452 4.95195 5.02688 5.15813 5.21121 5.30364 5.32320 5.56247 5.64211 5.90308 6.19734 6.32423 6.76132 6.90733 7.11335 8.30094 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.049035 B = 0.007319 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.878296 B = 3824.936398 C = 4313.912807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.137 4.137 3 C -0.043 4.043 4 C -0.157 4.157 5 C 0.131 3.869 6 O -0.226 6.226 7 C -0.071 4.071 8 C -0.118 4.118 9 C -0.465 4.465 10 H 0.063 0.937 11 C 0.028 3.972 12 N -0.836 5.836 13 Si 0.988 3.012 14 H -0.254 1.254 15 H -0.262 1.262 16 H -0.270 1.270 17 C 0.392 3.608 18 O -0.532 6.532 19 C -0.268 4.268 20 C -0.051 4.051 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.182 0.818 25 H 0.163 0.837 26 H 0.192 0.808 27 H 0.294 0.706 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 9.132 -1.882 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.138 4.138 3 C -0.061 4.061 4 C -0.175 4.175 5 C 0.083 3.917 6 O -0.131 6.131 7 C -0.136 4.136 8 C -0.121 4.121 9 C -0.495 4.495 10 H 0.081 0.919 11 C -0.183 4.183 12 N -0.465 5.465 13 Si 0.809 3.191 14 H -0.178 1.178 15 H -0.186 1.186 16 H -0.194 1.194 17 C 0.283 3.717 18 O -0.419 6.419 19 C -0.270 4.270 20 C -0.069 4.069 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.199 0.801 25 H 0.181 0.819 26 H 0.208 0.792 27 H 0.104 0.896 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.725 8.866 -1.734 11.887 hybrid contribution 0.872 -1.312 0.068 1.576 sum -6.854 7.555 -1.666 10.336 Atomic orbital electron populations 1.20756 0.87764 1.03911 1.03346 1.20224 0.98354 0.91711 1.03470 1.21452 0.91981 0.99114 0.93541 1.20837 0.94535 0.95229 1.06903 1.19944 0.81254 0.94671 0.95821 1.82522 1.16265 1.36381 1.77882 1.23954 0.94098 0.81833 1.13755 1.20220 0.91870 0.95175 1.04876 1.19137 0.97668 0.95968 1.36738 0.91890 1.26648 1.00119 0.99787 0.91778 1.69719 1.21082 1.32148 1.23555 0.85092 0.77002 0.77664 0.79355 1.17780 1.18641 1.19442 1.21219 0.90441 0.87991 0.72048 1.90421 1.74858 1.31746 1.44894 1.20823 0.96586 0.93973 1.15636 1.21040 0.90979 0.99554 0.95326 0.90092 0.91863 0.88839 0.80091 0.81950 0.79206 0.89551 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.01 71.24 0.71 -1.14 15 2 C -0.14 -3.79 5.88 -19.86 -0.12 -3.91 15 3 C -0.04 -1.04 9.66 22.29 0.22 -0.83 15 4 C -0.16 -4.77 9.99 22.39 0.22 -4.55 15 5 C 0.13 5.57 6.77 23.02 0.16 5.72 15 6 O -0.23 -10.65 9.61 3.42 0.03 -10.62 15 7 C -0.07 -3.75 10.12 67.97 0.69 -3.06 15 8 C -0.12 -6.85 5.74 -19.82 -0.11 -6.96 15 9 C -0.46 -27.31 8.86 23.36 0.21 -27.11 15 10 H 0.06 3.82 7.84 -2.91 -0.02 3.80 15 11 C 0.03 1.48 5.13 85.21 0.44 1.92 15 12 N -0.84 -43.82 10.99 21.81 0.24 -43.58 15 13 Si 0.99 40.01 29.60 68.60 2.03 42.04 15 14 H -0.25 -9.61 7.11 99.48 0.71 -8.90 15 15 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 16 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 17 C 0.39 22.09 7.18 27.33 0.20 22.29 15 18 O -0.53 -31.87 16.98 -4.56 -0.08 -31.94 15 19 C -0.27 -12.48 5.89 -19.98 -0.12 -12.60 15 20 C -0.05 -1.93 9.30 22.47 0.21 -1.72 15 21 H 0.08 1.28 8.14 -2.39 -0.02 1.27 15 22 H 0.06 1.19 8.08 -2.39 -0.02 1.17 15 23 H 0.09 1.19 8.08 -2.39 -0.02 1.17 15 24 H 0.18 2.47 8.06 -2.91 -0.02 2.45 15 25 H 0.16 3.90 8.06 -2.91 -0.02 3.88 15 26 H 0.19 10.11 6.09 -2.91 -0.02 10.09 15 27 H 0.29 13.69 8.30 -92.71 -0.77 12.92 15 28 H 0.12 4.67 7.79 -2.91 -0.02 4.65 15 Total: -1.00 -69.31 253.46 6.11 -63.21 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.18 Total: 12.83 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 2.70 Total: -31.95 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.24 Total: -43.58 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.04 Total: -42.56 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -69.31 6.11 -63.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238539807.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.472 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds