Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30807 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48499 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47110 * 300.00262 * 3 2 1 6 6 H 1.48494 * 109.47056 * 60.00258 * 3 2 1 7 7 C 1.40052 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00250 * 199.39187 * 7 2 1 9 9 C 1.40905 * 119.99952 * 19.38627 * 7 2 1 10 10 C 1.41848 * 121.11491 * 218.62968 * 9 7 2 11 11 N 1.38872 * 120.64203 * 359.95769 * 10 9 7 12 12 C 1.38641 * 118.71576 * 179.97438 * 10 9 7 13 13 N 1.31854 * 121.02852 * 0.02562 * 12 10 9 14 14 C 1.31974 * 122.53055 * 359.97374 * 13 12 10 15 15 C 1.50699 * 119.43418 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.47127 * 119.99926 * 15 14 13 17 17 F 1.39893 * 109.47402 * 240.00392 * 15 14 13 18 18 C 1.38278 * 121.14147 * 0.02562 * 14 13 12 19 19 O 1.35715 * 120.59569 * 179.97438 * 18 14 13 20 20 H 0.96997 * 119.99930 * 354.53867 * 1 2 3 21 21 H 0.97002 * 120.00171 * 172.97977 * 11 10 9 22 22 H 0.97001 * 119.99908 * 352.98256 * 11 10 9 23 23 H 1.08004 * 119.48591 * 180.02562 * 12 10 9 24 24 H 1.09005 * 109.46538 * 0.02562 * 15 14 13 25 25 H 0.96699 * 114.00019 * 270.03866 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3463 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3963 1.2125 7 6 2.0084 -1.2129 -0.0005 8 1 3.0424 -1.2395 0.3100 9 6 1.3638 -2.3984 -0.4061 10 6 1.6088 -3.6291 0.2552 11 7 2.4948 -3.6949 1.3226 12 6 0.9470 -4.7651 -0.1849 13 7 0.1049 -4.7115 -1.1980 14 6 -0.1564 -3.5914 -1.8452 15 6 -1.1310 -3.6102 -2.9944 16 9 -2.1988 -2.7507 -2.7144 17 9 -0.4850 -3.1867 -4.1608 18 6 0.4496 -2.4010 -1.4877 19 8 0.1731 -1.2556 -2.1613 20 1 -0.4850 0.8362 0.0799 21 1 2.5796 -4.5156 1.8326 22 1 3.0288 -2.9201 1.5581 23 1 1.1240 -5.7087 0.3100 24 1 -1.5077 -4.6234 -3.1347 25 1 0.7550 -1.0931 -2.9163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238582014.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = -115.905693 kcal Electronic energy + Delta-G solvation = -16313.207771 eV Core-core repulsion = 13155.288328 eV Total energy + Delta-G solvation = -3157.919443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.10169 -46.10546 -38.87253 -35.80008 -34.43500 -33.05889 -29.71790 -29.08938 -25.70900 -24.60290 -21.84786 -20.56114 -17.78604 -17.17803 -16.87458 -16.36943 -15.89531 -15.79694 -14.82668 -14.73672 -13.93267 -13.58102 -13.09499 -12.89148 -12.54126 -12.50291 -12.17720 -11.71283 -11.41199 -11.12124 -10.92962 -10.49119 -10.30134 -10.11524 -9.53214 -9.14967 -8.21674 -7.56764 -6.81984 -6.65293 -4.40472 2.46931 2.68715 3.07867 3.11034 3.11846 3.93289 4.50773 4.59700 4.91047 5.08275 5.22508 5.58775 5.65718 6.00007 6.06789 6.52784 6.73188 6.96320 7.11064 7.45269 7.61429 8.06211 8.43957 8.60054 8.66994 8.84630 9.14370 9.32196 10.24852 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.024636 B = 0.012810 C = 0.009252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.288496 B = 2185.344636 C = 3025.497146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.090 3.910 3 Si 0.903 3.097 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.476 4.476 8 H 0.078 0.922 9 C 0.067 3.933 10 C 0.106 3.894 11 N -0.871 5.871 12 C 0.006 3.994 13 N -0.500 5.500 14 C -0.021 4.021 15 C 0.337 3.663 16 F -0.199 7.199 17 F -0.210 7.210 18 C 0.059 3.941 19 O -0.457 6.457 20 H 0.281 0.719 21 H 0.383 0.617 22 H 0.395 0.605 23 H 0.127 0.873 24 H 0.108 0.892 25 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -2.676 -1.173 3.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.507 4.507 8 H 0.096 0.904 9 C 0.056 3.944 10 C 0.000 4.000 11 N -0.412 5.412 12 C -0.152 4.152 13 N -0.214 5.214 14 C -0.160 4.160 15 C 0.282 3.718 16 F -0.180 7.180 17 F -0.192 7.192 18 C 0.007 3.993 19 O -0.261 6.261 20 H 0.092 0.908 21 H 0.209 0.791 22 H 0.224 0.776 23 H 0.144 0.856 24 H 0.125 0.875 25 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.196 -3.201 -1.146 3.604 hybrid contribution 1.305 1.644 0.313 2.122 sum 2.502 -1.557 -0.833 3.062 Atomic orbital electron populations 1.69675 1.07578 1.29484 1.30310 1.25698 0.94472 1.00510 0.92687 0.86358 0.80677 0.81588 0.78556 1.18753 1.19691 1.20267 1.18898 0.98469 0.90991 1.42325 0.90381 1.17761 0.93230 0.91427 0.92006 1.19046 0.95401 0.94993 0.90548 1.41810 1.47461 1.16720 1.35164 1.21314 1.00142 0.95763 0.98017 1.66612 1.18078 1.27065 1.09664 1.21003 1.03612 0.90884 1.00513 1.19834 0.80900 0.90895 0.80150 1.92980 1.57037 1.74130 1.93878 1.92909 1.82913 1.92353 1.51007 1.18802 1.01445 0.84492 0.94558 1.84948 1.57191 1.39392 1.44559 0.90779 0.79075 0.77592 0.85557 0.87499 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.68 11.21 55.55 0.62 -19.06 15 2 C 0.09 2.20 4.50 -17.31 -0.08 2.12 15 3 Si 0.90 18.36 29.61 -169.99 -5.03 13.33 15 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.27 -5.57 7.11 56.52 0.40 -5.16 15 6 H -0.28 -5.58 7.11 56.52 0.40 -5.17 15 7 C -0.48 -11.82 8.19 -37.89 -0.31 -12.13 15 8 H 0.08 1.83 7.24 -52.49 -0.38 1.45 15 9 C 0.07 1.70 5.40 -106.22 -0.57 1.12 15 10 C 0.11 2.40 6.82 -83.14 -0.57 1.83 15 11 N -0.87 -15.87 8.98 32.79 0.29 -15.57 15 12 C 0.01 0.13 11.04 -17.39 -0.19 -0.06 15 13 N -0.50 -11.65 10.20 -9.33 -0.10 -11.75 15 14 C -0.02 -0.49 6.29 -82.52 -0.52 -1.01 15 15 C 0.34 7.06 5.21 36.01 0.19 7.25 15 16 F -0.20 -4.51 16.94 2.25 0.04 -4.47 15 17 F -0.21 -4.28 16.94 2.25 0.04 -4.24 15 18 C 0.06 1.50 6.08 -38.28 -0.23 1.27 15 19 O -0.46 -11.37 9.40 -18.85 -0.18 -11.54 15 20 H 0.28 6.88 8.30 -40.82 -0.34 6.54 15 21 H 0.38 5.65 8.85 -40.82 -0.36 5.29 15 22 H 0.40 7.05 7.45 -40.82 -0.30 6.75 15 23 H 0.13 2.35 8.06 -52.48 -0.42 1.92 15 24 H 0.11 1.91 8.10 -51.93 -0.42 1.49 15 25 H 0.35 7.54 9.06 45.56 0.41 7.95 15 LS Contribution 235.19 15.07 3.54 3.54 Total: -1.00 -29.50 235.19 -3.66 -33.16 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.61 Total: 16.21 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.28 Total: 0.39 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.82 Total: -46.37 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.18 Total: -11.54 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.50 -3.66 -33.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238582014.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.744 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds