Wall clock time and date at job start Mon Mar 30 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30807 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48499 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47110 * 300.00262 * 3 2 1 6 6 H 1.48494 * 109.47056 * 60.00258 * 3 2 1 7 7 C 1.40052 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00250 * 199.39187 * 7 2 1 9 9 C 1.40905 * 119.99952 * 19.38627 * 7 2 1 10 10 C 1.41848 * 121.11491 * 218.62968 * 9 7 2 11 11 N 1.38872 * 120.64203 * 359.95769 * 10 9 7 12 12 C 1.38641 * 118.71576 * 179.97438 * 10 9 7 13 13 N 1.31854 * 121.02852 * 0.02562 * 12 10 9 14 14 C 1.31974 * 122.53055 * 359.97374 * 13 12 10 15 15 C 1.50699 * 119.43418 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.47127 * 119.99926 * 15 14 13 17 17 F 1.39893 * 109.47402 * 240.00392 * 15 14 13 18 18 C 1.38278 * 121.14147 * 0.02562 * 14 13 12 19 19 O 1.35715 * 120.59569 * 179.97438 * 18 14 13 20 20 H 0.96997 * 119.99930 * 354.53867 * 1 2 3 21 21 H 0.97002 * 120.00171 * 172.97977 * 11 10 9 22 22 H 0.97001 * 119.99908 * 352.98256 * 11 10 9 23 23 H 1.08004 * 119.48591 * 180.02562 * 12 10 9 24 24 H 1.09005 * 109.46538 * 0.02562 * 15 14 13 25 25 H 0.96699 * 114.00019 * 270.03866 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3463 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3963 1.2125 7 6 2.0084 -1.2129 -0.0005 8 1 3.0424 -1.2395 0.3100 9 6 1.3638 -2.3984 -0.4061 10 6 1.6088 -3.6291 0.2552 11 7 2.4948 -3.6949 1.3226 12 6 0.9470 -4.7651 -0.1849 13 7 0.1049 -4.7115 -1.1980 14 6 -0.1564 -3.5914 -1.8452 15 6 -1.1310 -3.6102 -2.9944 16 9 -2.1988 -2.7507 -2.7144 17 9 -0.4850 -3.1867 -4.1608 18 6 0.4496 -2.4010 -1.4877 19 8 0.1731 -1.2556 -2.1613 20 1 -0.4850 0.8362 0.0799 21 1 2.5796 -4.5156 1.8326 22 1 3.0288 -2.9201 1.5581 23 1 1.1240 -5.7087 0.3100 24 1 -1.5077 -4.6234 -3.1347 25 1 0.7550 -1.0931 -2.9163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238582014.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:44 Heat of formation + Delta-G solvation = -138.330755 kcal Electronic energy + Delta-G solvation = -16314.180195 eV Core-core repulsion = 13155.288328 eV Total energy + Delta-G solvation = -3158.891867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.77191 -47.78835 -40.65372 -37.63514 -36.17148 -34.83666 -31.53626 -30.78444 -27.54232 -26.29105 -23.65532 -22.32174 -19.57722 -18.95301 -18.59498 -18.05200 -17.60690 -17.50883 -16.53596 -16.46445 -15.59755 -15.31609 -14.85922 -14.61687 -14.24209 -14.19938 -13.96536 -13.41557 -13.11527 -12.82659 -12.66470 -12.19147 -11.97372 -11.80677 -11.32743 -10.95373 -10.03510 -9.41841 -8.60845 -8.36521 -6.26412 0.66466 0.89161 1.42493 1.48518 1.55349 2.24071 2.78811 2.88116 3.33625 3.41515 3.48772 3.87557 3.96737 4.32659 4.41535 4.76097 4.99576 5.17745 5.29609 5.64509 5.88984 6.24606 6.66181 6.87827 6.92489 7.31071 7.38436 7.51877 8.45461 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.024636 B = 0.012810 C = 0.009252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.288496 B = 2185.344636 C = 3025.497146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.053 3.947 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.085 0.915 9 C 0.030 3.970 10 C 0.108 3.892 11 N -0.854 5.854 12 C -0.004 4.004 13 N -0.497 5.497 14 C -0.043 4.043 15 C 0.339 3.661 16 F -0.212 7.212 17 F -0.208 7.208 18 C 0.037 3.963 19 O -0.469 6.469 20 H 0.282 0.718 21 H 0.402 0.598 22 H 0.399 0.601 23 H 0.163 0.837 24 H 0.144 0.856 25 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -3.245 -0.777 4.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.166 4.166 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.019 3.981 10 C 0.000 4.000 11 N -0.395 5.395 12 C -0.163 4.163 13 N -0.211 5.211 14 C -0.183 4.183 15 C 0.284 3.716 16 F -0.193 7.193 17 F -0.190 7.190 18 C -0.015 4.015 19 O -0.274 6.274 20 H 0.092 0.908 21 H 0.232 0.768 22 H 0.228 0.772 23 H 0.181 0.819 24 H 0.161 0.839 25 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.107 -3.796 -0.723 4.401 hybrid contribution 1.068 1.686 0.227 2.009 sum 3.175 -2.111 -0.496 3.845 Atomic orbital electron populations 1.69770 1.09270 1.30228 1.32506 1.26465 0.94933 1.03591 0.91659 0.85284 0.79580 0.77235 0.78237 1.17840 1.20091 1.19815 1.19120 0.98795 0.91531 1.43154 0.89707 1.18180 0.94261 0.92837 0.92809 1.19214 0.95380 0.94386 0.91005 1.41736 1.46005 1.17864 1.33920 1.21903 0.99542 0.97027 0.97793 1.66693 1.17962 1.26699 1.09757 1.21392 1.04474 0.90704 1.01748 1.20048 0.80073 0.92121 0.79318 1.92952 1.57544 1.74832 1.93995 1.92905 1.82929 1.92489 1.50668 1.19118 1.02231 0.84989 0.95139 1.84908 1.57701 1.39718 1.45063 0.90786 0.76803 0.77195 0.81944 0.83883 0.78544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.32 11.21 21.85 0.24 -42.07 15 2 C 0.05 2.58 4.50 85.29 0.38 2.97 15 3 Si 0.97 37.59 29.61 68.60 2.03 39.62 15 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 5 H -0.28 -10.70 7.11 99.48 0.71 -10.00 15 6 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 7 C -0.49 -24.46 8.19 23.36 0.19 -24.27 15 8 H 0.09 3.92 7.24 -2.91 -0.02 3.90 15 9 C 0.03 1.54 5.40 -20.90 -0.11 1.42 15 10 C 0.11 4.72 6.82 39.02 0.27 4.99 15 11 N -0.85 -29.18 8.98 -50.18 -0.45 -29.63 15 12 C 0.00 -0.16 11.04 84.79 0.94 0.77 15 13 N -0.50 -22.33 10.20 -183.43 -1.87 -24.20 15 14 C -0.04 -2.04 6.29 42.55 0.27 -1.77 15 15 C 0.34 13.83 5.21 71.24 0.37 14.20 15 16 F -0.21 -9.53 16.94 44.97 0.76 -8.77 15 17 F -0.21 -8.31 16.94 44.97 0.76 -7.55 15 18 C 0.04 1.89 6.08 23.11 0.14 2.03 15 19 O -0.47 -23.67 9.40 -90.36 -0.85 -24.52 15 20 H 0.28 14.04 8.30 -92.71 -0.77 13.27 15 21 H 0.40 10.64 8.85 -92.71 -0.82 9.82 15 22 H 0.40 13.45 7.45 -92.71 -0.69 12.76 15 23 H 0.16 5.45 8.06 -2.91 -0.02 5.42 15 24 H 0.14 4.79 8.10 -2.38 -0.02 4.77 15 25 H 0.36 15.81 9.06 -74.06 -0.67 15.14 15 Total: -1.00 -62.05 235.19 2.18 -59.87 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.90 Total: 36.91 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 2.44 Total: 0.34 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -2.08 Total: -95.90 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.85 Total: -24.52 kcal Atomic # 9 Polarization: -17.84 SS G_CDS: 1.52 Total: -16.32 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -62.05 2.18 -59.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238582014.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.458 kcal (2) G-P(sol) polarization free energy of solvation -62.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds