Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30792 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48505 * 109.47242 * 270.00308 * 3 2 1 5 5 H 1.48500 * 109.46930 * 30.00430 * 3 2 1 6 6 H 1.48502 * 109.46896 * 150.00074 * 3 2 1 7 7 C 1.40024 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99561 * 180.02562 * 7 2 1 9 9 C 1.40912 * 120.00118 * 359.97438 * 7 2 1 10 10 N 1.33834 * 119.89605 * 359.97438 * 9 7 2 11 11 C 1.31372 * 121.70759 * 180.02562 * 10 9 7 12 12 C 1.50698 * 119.34241 * 180.02562 * 11 10 9 13 13 F 1.39896 * 109.47248 * 119.99892 * 12 11 10 14 14 F 1.39897 * 109.47275 * 240.00080 * 12 11 10 15 15 C 1.38845 * 121.31731 * 359.74357 * 11 10 9 16 16 C 1.38892 * 119.63947 * 0.51610 * 15 11 10 17 17 O 1.35854 * 120.79254 * 179.77228 * 16 15 11 18 18 C 1.39935 * 118.41800 * 359.49935 * 16 15 11 19 19 N 1.38715 * 120.64815 * 180.23310 * 18 16 15 20 20 H 0.97006 * 119.99849 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46879 * 359.97438 * 12 11 10 22 22 H 1.08004 * 120.17734 * 180.26779 * 15 11 10 23 23 H 0.96696 * 114.00217 * 269.71976 * 17 16 15 24 24 H 0.97003 * 120.00165 * 359.97438 * 19 18 16 25 25 H 0.97001 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0465 -1.4001 5 1 1.4394 2.6526 0.7001 6 1 3.5395 1.4401 0.7000 7 6 2.0080 -1.2127 -0.0005 8 1 3.0881 -1.2126 -0.0001 9 6 1.3034 -2.4330 -0.0005 10 7 -0.0349 -2.4305 0.0005 11 6 -0.7274 -3.5469 0.0010 12 6 -2.2330 -3.4820 0.0016 13 9 -2.7278 -4.1210 -1.1403 14 9 -2.7269 -4.1205 1.1442 15 6 -0.0999 -4.7855 -0.0048 16 6 1.2874 -4.8526 -0.0004 17 8 1.9257 -6.0519 -0.0013 18 6 2.0121 -3.6555 -0.0010 19 7 3.3992 -3.6686 -0.0016 20 1 -0.4850 0.8401 0.0004 21 1 -2.5517 -2.4396 0.0020 22 1 -0.6874 -5.6917 -0.0086 23 1 2.1114 -6.3992 0.8818 24 1 3.8762 -4.5132 -0.0012 25 1 3.8921 -2.8332 -0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238584937.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -114.462822 kcal Electronic energy + Delta-G solvation = -15902.168170 eV Core-core repulsion = 12744.311294 eV Total energy + Delta-G solvation = -3157.856876 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.17314 -46.17577 -38.93902 -36.30698 -34.10383 -33.34220 -29.88706 -28.68082 -26.47518 -24.41600 -21.80864 -20.58454 -18.30309 -17.31217 -16.46644 -16.40096 -16.06034 -15.69536 -15.29110 -14.83149 -13.81452 -13.74847 -13.16778 -12.99548 -12.59717 -12.53463 -12.25104 -11.88872 -11.40097 -11.27419 -10.76464 -10.58157 -10.45497 -10.06674 -9.52745 -9.46791 -8.01407 -7.91628 -6.80776 -6.55448 -4.47957 2.50312 2.66419 3.02804 3.03860 3.05885 3.85540 4.50873 4.54310 4.90966 5.01880 5.21537 5.50520 5.76544 6.06759 6.19791 6.49217 6.66839 6.98611 7.04607 7.25201 7.46232 7.97572 8.16522 8.33718 8.60632 8.72128 8.83912 9.83352 10.20226 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.011197 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.015807 B = 2500.002376 C = 3549.984154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.070 3.930 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.430 4.430 8 H 0.083 0.917 9 C 0.234 3.766 10 N -0.449 5.449 11 C 0.040 3.960 12 C 0.327 3.673 13 F -0.210 7.210 14 F -0.211 7.211 15 C -0.247 4.247 16 C 0.050 3.950 17 O -0.498 6.498 18 C 0.079 3.921 19 N -0.867 5.867 20 H 0.274 0.726 21 H 0.123 0.877 22 H 0.104 0.896 23 H 0.365 0.635 24 H 0.384 0.616 25 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -1.892 1.565 2.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.155 4.155 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.462 4.462 8 H 0.101 0.899 9 C 0.102 3.898 10 N -0.164 5.164 11 C -0.103 4.103 12 C 0.272 3.728 13 F -0.192 7.192 14 F -0.192 7.192 15 C -0.272 4.272 16 C -0.004 4.004 17 O -0.304 6.304 18 C -0.029 4.029 19 N -0.409 5.409 20 H 0.086 0.914 21 H 0.140 0.860 22 H 0.122 0.878 23 H 0.217 0.783 24 H 0.211 0.789 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.882 -0.919 0.942 1.585 hybrid contribution 1.134 -0.384 0.511 1.302 sum 2.015 -1.304 1.454 2.806 Atomic orbital electron populations 1.70097 1.07166 1.27962 1.28869 1.25950 0.94937 1.00897 0.93758 0.86292 0.80304 0.80799 0.79227 1.19418 1.20052 1.18659 1.19187 0.93880 0.89194 1.43986 0.89877 1.18143 0.87369 0.90141 0.94132 1.68252 1.06490 1.24822 1.16799 1.20813 0.93828 0.90505 1.05121 1.20167 0.89488 0.93010 0.70091 1.92924 1.89059 1.85163 1.52023 1.92918 1.89107 1.85212 1.52003 1.20996 0.93381 0.97401 1.15464 1.17711 0.89683 0.82603 1.10416 1.84807 1.79019 1.34697 1.31925 1.19320 0.84889 0.94040 1.04679 1.41743 1.03234 1.09508 1.86464 0.91435 0.85977 0.87763 0.78259 0.78898 0.77601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.09 11.46 55.55 0.64 -17.46 15 2 C 0.07 1.67 5.50 -17.33 -0.10 1.57 15 3 Si 0.91 17.56 29.56 -169.99 -5.02 12.54 15 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.28 -5.27 7.11 56.52 0.40 -4.86 15 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 7 C -0.43 -10.63 8.89 -37.90 -0.34 -10.97 15 8 H 0.08 1.86 6.10 -52.48 -0.32 1.54 15 9 C 0.23 6.06 6.57 -84.82 -0.56 5.50 15 10 N -0.45 -11.90 7.73 -7.27 -0.06 -11.96 15 11 C 0.04 0.97 6.28 -82.56 -0.52 0.45 15 12 C 0.33 6.97 5.53 36.00 0.20 7.17 15 13 F -0.21 -4.43 17.24 2.25 0.04 -4.39 15 14 F -0.21 -4.37 17.25 2.25 0.04 -4.33 15 15 C -0.25 -5.82 9.57 -39.11 -0.37 -6.20 15 16 C 0.05 1.14 6.79 -38.70 -0.26 0.88 15 17 O -0.50 -9.56 12.88 -19.28 -0.25 -9.81 15 18 C 0.08 1.83 6.83 -82.95 -0.57 1.26 15 19 N -0.87 -16.35 8.97 32.90 0.30 -16.06 15 20 H 0.27 6.26 8.30 -40.82 -0.34 5.92 15 21 H 0.12 2.46 8.10 -51.93 -0.42 2.04 15 22 H 0.10 2.32 8.06 -52.48 -0.42 1.90 15 23 H 0.37 5.26 9.06 45.56 0.41 5.67 15 24 H 0.38 6.27 8.28 -40.82 -0.34 5.93 15 25 H 0.39 7.01 6.83 -40.82 -0.28 6.73 15 LS Contribution 237.07 15.07 3.57 3.57 Total: -1.00 -28.94 237.07 -3.76 -32.70 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.50 Total: 15.54 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.51 Total: -0.34 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.88 Total: -45.47 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.25 Total: -9.81 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.02 Total: 12.54 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.94 -3.76 -32.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584937.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.766 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds