Wall clock time and date at job start Mon Mar 30 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30808 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48496 * 109.47075 * 239.99693 * 3 2 1 5 5 H 1.48509 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47334 * 119.99512 * 3 2 1 7 7 C 1.39953 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.41087 * 120.00416 * 0.02562 * 7 2 1 10 10 N 1.33777 * 119.70743 * 343.60255 * 9 7 2 11 11 C 1.31336 * 121.69946 * 180.02562 * 10 9 7 12 12 C 1.39524 * 120.92342 * 0.02567 * 11 10 9 13 13 N 1.39037 * 120.33904 * 179.97438 * 12 11 10 14 14 C 1.40373 * 119.32185 * 359.97438 * 12 11 10 15 15 O 1.35859 * 120.78434 * 179.97438 * 14 12 11 16 16 C 1.38251 * 118.43855 * 0.25454 * 14 12 11 17 17 C 1.50696 * 120.48340 * 179.74622 * 16 14 12 18 18 F 1.39901 * 109.47084 * 21.24179 * 17 16 14 19 19 F 1.39901 * 109.47029 * 141.23528 * 17 16 14 20 20 H 0.97001 * 120.00331 * 0.02562 * 1 2 3 21 21 H 1.08006 * 119.53848 * 180.02562 * 11 10 9 22 22 H 0.97003 * 119.99821 * 180.02562 * 13 12 11 23 23 H 0.97002 * 120.00180 * 0.02562 * 13 12 11 24 24 H 0.96701 * 113.99767 * 90.00292 * 15 14 12 25 25 H 1.08993 * 109.47649 * 261.23885 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0959 1.6964 -1.2124 5 1 1.2770 2.7465 -0.0006 6 1 3.0957 1.6965 1.2125 7 6 2.0078 -1.2121 0.0005 8 1 3.0878 -1.2121 0.0010 9 6 1.3024 -2.4339 0.0005 10 7 0.0055 -2.4507 0.3281 11 6 -0.6886 -3.5656 0.3414 12 6 -0.0942 -4.7842 0.0123 13 7 -0.8403 -5.9573 0.0309 14 6 1.2649 -4.8138 -0.3378 15 8 1.8739 -5.9839 -0.6630 16 6 1.9707 -3.6250 -0.3382 17 6 3.4331 -3.6044 -0.7011 18 9 3.7450 -4.7468 -1.4460 19 9 3.7090 -2.4626 -1.4610 20 1 -0.4851 0.8400 -0.0004 21 1 -1.7342 -3.5388 0.6109 22 1 -0.4219 -6.8019 -0.1984 23 1 -1.7792 -5.9312 0.2732 24 1 1.8345 -6.1993 -1.6049 25 1 4.0331 -3.5890 0.2087 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585441.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:49 Heat of formation + Delta-G solvation = -132.185302 kcal Electronic energy + Delta-G solvation = -16248.173313 eV Core-core repulsion = 13089.547933 eV Total energy + Delta-G solvation = -3158.625380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.65808 -47.67100 -40.64480 -37.91576 -35.89996 -34.55308 -32.52396 -30.11612 -27.44559 -26.27627 -23.39653 -22.50711 -20.00774 -18.87439 -18.20560 -17.97744 -17.88897 -17.05471 -16.90141 -16.03477 -15.70220 -15.48410 -14.71520 -14.49560 -14.20792 -14.09651 -13.88469 -13.67301 -12.99113 -12.88612 -12.37032 -12.17985 -11.96878 -11.70723 -11.15621 -10.84512 -9.90317 -9.68965 -8.46745 -8.34904 -6.23836 0.59420 1.00450 1.43790 1.54563 1.57294 2.27340 2.82810 3.14213 3.31766 3.43926 3.69211 3.79819 4.15417 4.34150 4.36682 4.74466 4.95696 5.24703 5.35734 5.44804 5.78876 6.26864 6.65393 6.71042 6.92759 7.09792 7.32920 8.06887 8.48835 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.011730 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.323229 B = 2386.437627 C = 3309.109797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.029 3.971 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.096 0.904 9 C 0.233 3.767 10 N -0.485 5.485 11 C 0.074 3.926 12 C 0.018 3.982 13 N -0.868 5.868 14 C 0.117 3.883 15 O -0.489 6.489 16 C -0.343 4.343 17 C 0.344 3.656 18 F -0.208 7.208 19 F -0.208 7.208 20 H 0.279 0.721 21 H 0.148 0.852 22 H 0.397 0.603 23 H 0.400 0.600 24 H 0.391 0.609 25 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -5.593 -0.921 5.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.191 4.191 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.114 0.886 9 C 0.107 3.893 10 N -0.197 5.197 11 C -0.095 4.095 12 C -0.087 4.087 13 N -0.414 5.414 14 C 0.060 3.940 15 O -0.299 6.299 16 C -0.350 4.350 17 C 0.290 3.710 18 F -0.190 7.190 19 F -0.189 7.189 20 H 0.089 0.911 21 H 0.165 0.835 22 H 0.226 0.774 23 H 0.229 0.771 24 H 0.248 0.752 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.053 -4.597 -0.150 4.719 hybrid contribution 0.237 -0.441 -0.879 1.012 sum 1.289 -5.038 -1.030 5.301 Atomic orbital electron populations 1.70132 1.08706 1.29252 1.31278 1.26849 0.95638 1.04299 0.92354 0.85299 0.78732 0.75920 0.80046 1.18706 1.19347 1.18114 1.19932 0.95210 0.90020 1.44382 0.88637 1.18353 0.88404 0.91749 0.90761 1.68580 1.07791 1.26610 1.16700 1.22769 1.00082 0.87070 0.99603 1.18790 0.90829 0.89682 1.09442 1.41414 1.12300 1.05350 1.82326 1.17622 0.89169 0.84619 1.02579 1.84684 1.77869 1.36359 1.31000 1.21345 0.97234 0.95330 1.21055 1.19785 0.93650 0.69887 0.87716 1.92861 1.94153 1.51870 1.80097 1.92925 1.94810 1.51966 1.79216 0.91057 0.83473 0.77445 0.77125 0.75211 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -41.43 11.61 21.83 0.25 -41.18 15 2 C 0.03 1.49 5.48 85.26 0.47 1.95 15 3 Si 0.98 38.79 29.56 68.60 2.03 40.82 15 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 7 C -0.46 -24.88 7.85 23.38 0.18 -24.69 15 8 H 0.10 4.85 5.83 -2.91 -0.02 4.83 15 9 C 0.23 12.62 6.45 40.15 0.26 12.87 15 10 N -0.48 -26.20 8.04 -188.64 -1.52 -27.72 15 11 C 0.07 3.40 11.05 85.08 0.94 4.34 15 12 C 0.02 0.72 6.82 38.83 0.26 0.98 15 13 N -0.87 -26.15 9.06 -50.48 -0.46 -26.61 15 14 C 0.12 5.01 6.68 22.79 0.15 5.16 15 15 O -0.49 -17.50 10.80 -91.96 -0.99 -18.50 15 16 C -0.34 -16.38 5.80 -19.26 -0.11 -16.50 15 17 C 0.34 14.44 5.14 71.23 0.37 14.80 15 18 F -0.21 -8.08 14.89 44.97 0.67 -7.41 15 19 F -0.21 -9.42 14.46 44.97 0.65 -8.77 15 20 H 0.28 13.65 8.30 -92.71 -0.77 12.89 15 21 H 0.15 5.82 8.06 -2.91 -0.02 5.80 15 22 H 0.40 10.57 8.26 -92.71 -0.77 9.80 15 23 H 0.40 10.02 8.84 -92.71 -0.82 9.20 15 24 H 0.39 11.17 8.78 -74.06 -0.65 10.52 15 25 H 0.12 4.37 8.14 -2.39 -0.02 4.35 15 Total: -1.00 -63.26 231.23 2.21 -61.05 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.94 Total: 29.39 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 2.52 Total: -1.07 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -1.72 Total: -95.51 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.99 Total: -18.50 kcal Atomic # 9 Polarization: -17.50 SS G_CDS: 1.32 Total: -16.18 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -63.26 2.21 -61.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585441.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.133 kcal (2) G-P(sol) polarization free energy of solvation -63.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds