Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30792 * 1 3 3 Si 1.86794 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47505 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47118 * 300.00312 * 3 2 1 6 6 H 1.48502 * 109.47351 * 59.99850 * 3 2 1 7 7 C 1.40032 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99556 * 163.67598 * 7 2 1 9 9 C 1.41085 * 120.00193 * 343.94874 * 7 2 1 10 10 C 1.41648 * 121.05601 * 315.57667 * 9 7 2 11 11 N 1.38842 * 120.77219 * 0.02562 * 10 9 7 12 12 C 1.39664 * 118.45648 * 179.77632 * 10 9 7 13 13 O 1.35777 * 119.71013 * 180.24548 * 12 10 9 14 14 N 1.32046 * 120.57418 * 0.51668 * 12 10 9 15 15 C 1.32309 * 122.37594 * 359.72649 * 14 12 10 16 16 C 1.36292 * 121.49882 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.39324 * 180.02562 * 16 15 14 18 18 F 1.39904 * 109.46659 * 119.98214 * 17 16 15 19 19 F 1.39894 * 109.47136 * 239.97772 * 17 16 15 20 20 H 0.97003 * 119.99806 * 5.04048 * 1 2 3 21 21 H 0.96992 * 119.99821 * 351.19857 * 11 10 9 22 22 H 0.97002 * 119.99500 * 171.19575 * 11 10 9 23 23 H 0.96701 * 113.99885 * 270.26292 * 13 12 10 24 24 H 1.07996 * 119.25214 * 179.97438 * 15 14 12 25 25 H 1.08996 * 109.46864 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6176 0.0000 4 1 3.7020 1.3463 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8833 2.3964 1.2125 7 6 2.0080 -1.2128 -0.0005 8 1 3.0553 -1.2315 -0.2634 9 6 1.3438 -2.4109 0.3367 10 6 0.4672 -2.4727 1.4478 11 7 0.2384 -1.3523 2.2351 12 6 -0.1655 -3.6855 1.7296 13 8 -1.0147 -3.7720 2.7855 14 7 0.0591 -4.7500 0.9813 15 6 0.8757 -4.7250 -0.0594 16 6 1.5365 -3.5885 -0.4189 17 6 2.4605 -3.5880 -1.6094 18 9 2.0074 -2.6577 -2.5510 19 9 3.7520 -3.2428 -1.1971 20 1 -0.4850 0.8368 -0.0738 21 1 0.7731 -0.5531 2.1085 22 1 -0.4564 -1.3688 2.9119 23 1 -0.5862 -4.0231 3.6152 24 1 1.0228 -5.6259 -0.6365 25 1 2.4756 -4.5813 -2.0580 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238588990.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -114.509080 kcal Electronic energy + Delta-G solvation = -16363.894691 eV Core-core repulsion = 13206.035809 eV Total energy + Delta-G solvation = -3157.858882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.84544 -45.83243 -39.04601 -36.06558 -34.78726 -32.47477 -31.02899 -28.42205 -25.86647 -24.45963 -21.61227 -20.72365 -18.21655 -17.26086 -16.61437 -16.21855 -16.10333 -15.43166 -15.11430 -14.54356 -14.30795 -13.81532 -12.86769 -12.79905 -12.26630 -12.20401 -12.04760 -11.64024 -11.45261 -11.24146 -11.02126 -10.63709 -10.25702 -10.02140 -9.90783 -9.31736 -8.18926 -8.00227 -6.90489 -6.32254 -4.59703 2.29998 2.76019 3.00202 3.07287 3.07578 3.84347 4.44321 4.71532 4.83688 5.10338 5.31817 5.42216 5.77458 6.01199 6.21094 6.57425 6.64475 6.92267 7.09932 7.32708 7.63131 8.16310 8.29458 8.45490 8.64618 8.89892 9.00549 9.36040 10.06391 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.015390 C = 0.009832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.878761 B = 1818.921911 C = 2847.290010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.464 4.464 8 H 0.093 0.907 9 C 0.128 3.872 10 C 0.136 3.864 11 N -0.842 5.842 12 C 0.201 3.799 13 O -0.487 6.487 14 N -0.541 5.541 15 C 0.106 3.894 16 C -0.295 4.295 17 C 0.341 3.659 18 F -0.203 7.203 19 F -0.213 7.213 20 H 0.282 0.718 21 H 0.395 0.605 22 H 0.381 0.619 23 H 0.367 0.633 24 H 0.128 0.872 25 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -1.190 1.401 3.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.148 4.148 3 Si 0.729 3.271 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.496 4.496 8 H 0.111 0.889 9 C 0.116 3.884 10 C 0.026 3.974 11 N -0.381 5.381 12 C 0.024 3.976 13 O -0.290 6.290 14 N -0.261 5.261 15 C -0.056 4.056 16 C -0.302 4.302 17 C 0.287 3.713 18 F -0.184 7.184 19 F -0.195 7.195 20 H 0.093 0.907 21 H 0.226 0.774 22 H 0.208 0.792 23 H 0.220 0.780 24 H 0.145 0.855 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.965 -1.588 1.308 2.845 hybrid contribution 0.890 1.859 0.198 2.071 sum 2.855 0.271 1.507 3.240 Atomic orbital electron populations 1.69838 1.07295 1.29624 1.33837 1.25871 0.94720 1.01022 0.93162 0.86290 0.81283 0.80849 0.78719 1.18159 1.19773 1.19723 1.19388 0.98288 0.90003 1.41886 0.88925 1.17105 0.90848 0.92536 0.87870 1.19120 0.98210 0.87479 0.92627 1.41811 1.41522 1.14542 1.40178 1.18385 0.97709 0.88738 0.92810 1.84854 1.35278 1.90993 1.17911 1.66632 1.19584 1.30980 1.08950 1.20846 0.94271 0.95819 0.94642 1.20679 1.09995 0.97955 1.01588 1.19795 0.76818 0.89126 0.85567 1.92961 1.89140 1.70046 1.66274 1.92908 1.41074 1.94039 1.91430 0.90688 0.77387 0.79235 0.77999 0.85460 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.31 11.30 55.55 0.63 -18.68 15 2 C 0.07 1.69 3.61 -17.32 -0.06 1.63 15 3 Si 0.90 18.01 29.59 -169.99 -5.03 12.98 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.46 -11.72 7.29 -37.83 -0.28 -12.00 15 8 H 0.09 2.37 6.72 -52.49 -0.35 2.02 15 9 C 0.13 3.24 5.28 -106.38 -0.56 2.68 15 10 C 0.14 3.30 6.32 -82.85 -0.52 2.78 15 11 N -0.84 -18.14 7.74 32.94 0.25 -17.88 15 12 C 0.20 4.77 7.78 -16.93 -0.13 4.64 15 13 O -0.49 -10.04 12.86 -19.04 -0.24 -10.29 15 14 N -0.54 -12.91 10.35 -13.51 -0.14 -13.05 15 15 C 0.11 2.34 10.73 -18.05 -0.19 2.15 15 16 C -0.29 -6.88 5.39 -104.18 -0.56 -7.44 15 17 C 0.34 7.02 5.05 36.01 0.18 7.20 15 18 F -0.20 -4.63 16.65 2.25 0.04 -4.59 15 19 F -0.21 -4.54 15.92 2.25 0.04 -4.51 15 20 H 0.28 6.44 8.30 -40.82 -0.34 6.10 15 21 H 0.40 8.60 6.10 -40.82 -0.25 8.35 15 22 H 0.38 7.33 8.25 -40.82 -0.34 6.99 15 23 H 0.37 5.71 9.06 45.56 0.41 6.12 15 24 H 0.13 2.31 7.91 -52.49 -0.41 1.89 15 25 H 0.09 1.48 7.86 -51.93 -0.41 1.07 15 LS Contribution 231.40 15.07 3.49 3.49 Total: -1.00 -29.42 231.40 -3.58 -33.00 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.48 Total: 17.89 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.13 Total: 1.63 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.74 Total: -49.61 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.24 Total: -10.29 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.42 -3.58 -33.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588990.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.505 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds