Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30792 * 1 3 3 Si 1.86794 * 120.00362 * 2 1 4 4 H 1.48499 * 109.47505 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47118 * 300.00312 * 3 2 1 6 6 H 1.48502 * 109.47351 * 59.99850 * 3 2 1 7 7 C 1.40032 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99556 * 163.67598 * 7 2 1 9 9 C 1.41085 * 120.00193 * 343.94874 * 7 2 1 10 10 C 1.41648 * 121.05601 * 315.57667 * 9 7 2 11 11 N 1.38842 * 120.77219 * 0.02562 * 10 9 7 12 12 C 1.39664 * 118.45648 * 179.77632 * 10 9 7 13 13 O 1.35777 * 119.71013 * 180.24548 * 12 10 9 14 14 N 1.32046 * 120.57418 * 0.51668 * 12 10 9 15 15 C 1.32309 * 122.37594 * 359.72649 * 14 12 10 16 16 C 1.36292 * 121.49882 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.39324 * 180.02562 * 16 15 14 18 18 F 1.39904 * 109.46659 * 119.98214 * 17 16 15 19 19 F 1.39894 * 109.47136 * 239.97772 * 17 16 15 20 20 H 0.97003 * 119.99806 * 5.04048 * 1 2 3 21 21 H 0.96992 * 119.99821 * 351.19857 * 11 10 9 22 22 H 0.97002 * 119.99500 * 171.19575 * 11 10 9 23 23 H 0.96701 * 113.99885 * 270.26292 * 13 12 10 24 24 H 1.07996 * 119.25214 * 179.97438 * 15 14 12 25 25 H 1.08996 * 109.46864 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6176 0.0000 4 1 3.7020 1.3463 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8833 2.3964 1.2125 7 6 2.0080 -1.2128 -0.0005 8 1 3.0553 -1.2315 -0.2634 9 6 1.3438 -2.4109 0.3367 10 6 0.4672 -2.4727 1.4478 11 7 0.2384 -1.3523 2.2351 12 6 -0.1655 -3.6855 1.7296 13 8 -1.0147 -3.7720 2.7855 14 7 0.0591 -4.7500 0.9813 15 6 0.8757 -4.7250 -0.0594 16 6 1.5365 -3.5885 -0.4189 17 6 2.4605 -3.5880 -1.6094 18 9 2.0074 -2.6577 -2.5510 19 9 3.7520 -3.2428 -1.1971 20 1 -0.4850 0.8368 -0.0738 21 1 0.7731 -0.5531 2.1085 22 1 -0.4564 -1.3688 2.9119 23 1 -0.5862 -4.0231 3.6152 24 1 1.0228 -5.6259 -0.6365 25 1 2.4756 -4.5813 -2.0580 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238588990.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -138.481614 kcal Electronic energy + Delta-G solvation = -16364.934218 eV Core-core repulsion = 13206.035809 eV Total energy + Delta-G solvation = -3158.898409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.50726 -47.51441 -40.79535 -37.75067 -36.55093 -34.23447 -32.79286 -30.17531 -27.66298 -26.15473 -23.38654 -22.44817 -19.96903 -18.98509 -18.33288 -17.91316 -17.77500 -17.13350 -16.82284 -16.24543 -16.02074 -15.50338 -14.55954 -14.50935 -13.95537 -13.91324 -13.80506 -13.34431 -13.11720 -12.89851 -12.72716 -12.30869 -11.94645 -11.69825 -11.62261 -11.07730 -9.97124 -9.79549 -8.68463 -8.07610 -6.45877 0.52508 1.02765 1.38507 1.43812 1.51623 2.19501 2.67228 3.06711 3.28197 3.40286 3.58938 3.79681 4.17976 4.37324 4.56580 4.82709 4.95205 5.14176 5.32443 5.59418 5.94874 6.28736 6.52329 6.80650 6.81877 7.18012 7.35700 7.58016 8.30323 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.015390 C = 0.009832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.878761 B = 1818.921911 C = 2847.290010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.042 3.958 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.487 4.487 8 H 0.079 0.921 9 C 0.095 3.905 10 C 0.116 3.884 11 N -0.834 5.834 12 C 0.194 3.806 13 O -0.489 6.489 14 N -0.555 5.555 15 C 0.103 3.897 16 C -0.309 4.309 17 C 0.336 3.664 18 F -0.219 7.219 19 F -0.220 7.220 20 H 0.288 0.712 21 H 0.394 0.606 22 H 0.390 0.610 23 H 0.391 0.609 24 H 0.170 0.830 25 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 -1.450 1.391 3.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.174 4.174 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.519 4.519 8 H 0.097 0.903 9 C 0.083 3.917 10 C 0.005 3.995 11 N -0.373 5.373 12 C 0.016 3.984 13 O -0.296 6.296 14 N -0.276 5.276 15 C -0.058 4.058 16 C -0.316 4.316 17 C 0.282 3.718 18 F -0.201 7.201 19 F -0.202 7.202 20 H 0.099 0.901 21 H 0.224 0.776 22 H 0.218 0.782 23 H 0.247 0.753 24 H 0.187 0.813 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.169 -1.864 1.326 3.152 hybrid contribution 0.787 1.831 0.237 2.007 sum 2.956 -0.032 1.562 3.343 Atomic orbital electron populations 1.69878 1.08472 1.30682 1.34643 1.26484 0.95268 1.03475 0.92209 0.85347 0.79493 0.77045 0.79121 1.18744 1.19854 1.17980 1.19401 0.97822 0.91106 1.43538 0.90275 1.17545 0.91824 0.93583 0.88710 1.19283 0.98810 0.88384 0.93015 1.41690 1.41702 1.13896 1.40049 1.18585 0.97527 0.88710 0.93562 1.84768 1.35186 1.91110 1.18528 1.66746 1.20222 1.31036 1.09613 1.21480 0.93088 0.96984 0.94213 1.21133 1.10363 0.97815 1.02299 1.20298 0.75779 0.90990 0.84713 1.92923 1.89361 1.71111 1.66669 1.92888 1.41417 1.94290 1.91567 0.90138 0.77607 0.78158 0.75265 0.81274 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.04 11.30 21.84 0.25 -39.79 15 2 C 0.04 1.98 3.61 85.28 0.31 2.29 15 3 Si 0.97 36.74 29.59 68.60 2.03 38.77 15 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 15 6 H -0.26 -8.95 7.11 99.48 0.71 -8.24 15 7 C -0.49 -24.76 7.29 23.40 0.17 -24.59 15 8 H 0.08 4.12 6.72 -2.91 -0.02 4.10 15 9 C 0.09 4.80 5.28 -21.00 -0.11 4.69 15 10 C 0.12 5.60 6.32 39.22 0.25 5.85 15 11 N -0.83 -35.74 7.74 -49.70 -0.38 -36.12 15 12 C 0.19 9.03 7.78 85.01 0.66 9.69 15 13 O -0.49 -19.51 12.86 -91.05 -1.17 -20.68 15 14 N -0.56 -25.60 10.35 -309.58 -3.20 -28.81 15 15 C 0.10 4.34 10.73 84.17 0.90 5.24 15 16 C -0.31 -14.07 5.39 -19.58 -0.11 -14.17 15 17 C 0.34 13.22 5.05 71.24 0.36 13.58 15 18 F -0.22 -9.81 16.65 44.97 0.75 -9.06 15 19 F -0.22 -9.16 15.92 44.97 0.72 -8.45 15 20 H 0.29 13.05 8.30 -92.71 -0.77 12.28 15 21 H 0.39 17.08 6.10 -92.71 -0.57 16.52 15 22 H 0.39 14.79 8.25 -92.71 -0.77 14.03 15 23 H 0.39 11.47 9.06 -74.06 -0.67 10.79 15 24 H 0.17 5.49 7.91 -2.91 -0.02 5.46 15 25 H 0.15 4.18 7.86 -2.39 -0.02 4.16 15 Total: -1.00 -62.22 231.40 0.71 -61.51 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.71 Total: 40.06 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 2.43 Total: 2.57 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -3.34 Total: -104.72 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -1.17 Total: -20.68 kcal Atomic # 9 Polarization: -18.98 SS G_CDS: 1.46 Total: -17.51 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -62.22 0.71 -61.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588990.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.969 kcal (2) G-P(sol) polarization free energy of solvation -62.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds