Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86806 * 120.00336 * 2 1 4 4 H 1.48499 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46751 * 299.99977 * 3 2 1 6 6 H 1.48499 * 109.46981 * 59.99969 * 3 2 1 7 7 C 1.39929 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99445 * 159.52931 * 7 2 1 9 9 C 1.41111 * 119.99973 * 339.53055 * 7 2 1 10 10 C 1.41543 * 120.65375 * 321.01145 * 9 7 2 11 11 O 1.35448 * 119.80239 * 359.97438 * 10 9 7 12 12 N 1.31984 * 120.39517 * 179.97438 * 10 9 7 13 13 C 1.32027 * 121.96865 * 0.02562 * 12 10 9 14 14 C 1.39306 * 121.30291 * 0.02562 * 13 12 10 15 15 N 1.39893 * 120.28695 * 179.97438 * 14 13 12 16 16 C 1.38611 * 119.43136 * 0.24937 * 14 13 12 17 17 C 1.50701 * 120.89228 * 179.74463 * 16 14 13 18 18 F 1.39902 * 109.47150 * 120.00520 * 17 16 14 19 19 F 1.39898 * 109.47334 * 240.00048 * 17 16 14 20 20 H 0.97003 * 119.99592 * 0.02562 * 1 2 3 21 21 H 0.96702 * 114.00552 * 272.35609 * 11 10 9 22 22 H 1.07996 * 119.34959 * 180.02562 * 13 12 10 23 23 H 0.97005 * 119.99495 * 359.97438 * 15 14 13 24 24 H 0.96991 * 120.00350 * 179.97438 * 15 14 13 25 25 H 1.09002 * 109.47563 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2119 0.0005 8 1 3.0371 -1.2415 -0.3266 9 6 1.3695 -2.3951 0.4284 10 6 0.4811 -2.3777 1.5302 11 8 0.2402 -1.2153 2.1825 12 7 -0.1140 -3.4874 1.9258 13 6 0.0900 -4.6435 1.3218 14 6 0.9496 -4.7483 0.2306 15 7 1.1505 -5.9842 -0.3931 16 6 1.6086 -3.6185 -0.2283 17 6 2.5502 -3.6953 -1.4024 18 9 2.0927 -2.8547 -2.4229 19 9 3.8282 -3.2903 -1.0026 20 1 -0.4850 0.8401 -0.0004 21 1 0.8663 -1.0270 2.8950 22 1 -0.4197 -5.5254 1.6807 23 1 0.6906 -6.7731 -0.0658 24 1 1.7497 -6.0524 -1.1528 25 1 2.5918 -4.7212 -1.7684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238595986.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = -135.484006 kcal Electronic energy + Delta-G solvation = -16419.828888 eV Core-core repulsion = 13261.060465 eV Total energy + Delta-G solvation = -3158.768423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.62980 -47.62881 -40.60951 -37.78685 -35.63791 -35.15967 -32.95100 -29.46839 -27.89067 -26.48925 -23.20437 -22.52326 -19.64785 -19.09339 -18.93272 -17.89369 -17.32398 -17.30239 -16.80608 -16.24756 -15.85846 -15.50298 -14.72134 -14.60464 -14.17011 -14.04772 -13.65963 -13.40861 -13.18543 -12.76556 -12.66668 -12.02967 -11.99652 -11.84481 -11.62503 -10.98250 -10.01142 -9.69355 -8.70029 -8.26772 -6.45833 0.74942 0.88663 1.40959 1.49093 1.55758 2.22872 2.75777 2.87700 3.24198 3.33633 3.61399 3.66149 4.04300 4.43742 4.56549 4.72170 5.01306 5.21173 5.41222 5.60337 5.78315 6.28521 6.44661 6.65776 6.81417 7.09482 7.41313 7.72579 8.32178 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.013661 C = 0.009943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.279089 B = 2049.096701 C = 2815.266746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.054 3.946 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.475 4.475 8 H 0.081 0.919 9 C 0.100 3.900 10 C 0.167 3.833 11 O -0.467 6.467 12 N -0.470 5.470 13 C -0.095 4.095 14 C 0.230 3.770 15 N -0.859 5.859 16 C -0.344 4.344 17 C 0.342 3.658 18 F -0.217 7.217 19 F -0.218 7.218 20 H 0.289 0.711 21 H 0.367 0.633 22 H 0.158 0.842 23 H 0.411 0.589 24 H 0.400 0.600 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -6.139 -1.758 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.168 4.168 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.503 4.503 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.020 4.020 11 O -0.269 6.269 12 N -0.188 5.188 13 C -0.253 4.253 14 C 0.123 3.877 15 N -0.403 5.403 16 C -0.357 4.357 17 C 0.289 3.711 18 F -0.199 7.199 19 F -0.199 7.199 20 H 0.100 0.900 21 H 0.220 0.780 22 H 0.175 0.825 23 H 0.242 0.758 24 H 0.231 0.769 25 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.060 -5.865 -1.467 6.777 hybrid contribution 1.051 0.587 -0.471 1.293 sum 4.112 -5.279 -1.938 6.966 Atomic orbital electron populations 1.69815 1.09369 1.30909 1.29725 1.26560 0.95019 1.03942 0.91263 0.85282 0.79491 0.76702 0.79003 1.18270 1.19433 1.18433 1.19568 0.99266 0.92346 1.39096 0.90097 1.18337 0.89210 0.93023 0.90084 1.19161 1.02837 0.84539 0.95446 1.84856 1.56106 1.35398 1.50534 1.66384 1.21374 0.99371 1.31709 1.21500 1.08518 0.94728 1.00567 1.18214 0.92024 0.85939 0.91552 1.42254 1.54147 1.06435 1.37436 1.20203 1.14330 0.95279 1.05884 1.19920 0.76404 0.91676 0.83106 1.92934 1.89273 1.76169 1.61490 1.92900 1.42363 1.92970 1.91690 0.90045 0.78046 0.82490 0.75779 0.76942 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.87 11.30 21.83 0.25 -41.62 15 2 C 0.05 2.71 4.41 85.25 0.38 3.09 15 3 Si 0.97 38.79 29.61 68.60 2.03 40.83 15 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 7 C -0.47 -25.32 7.54 23.39 0.18 -25.15 15 8 H 0.08 4.33 6.60 -2.91 -0.02 4.31 15 9 C 0.10 5.36 5.36 -21.11 -0.11 5.24 15 10 C 0.17 8.99 7.27 85.49 0.62 9.61 15 11 O -0.47 -24.13 10.50 -87.45 -0.92 -25.05 15 12 N -0.47 -23.86 10.36 -306.37 -3.17 -27.03 15 13 C -0.10 -4.09 11.04 84.92 0.94 -3.15 15 14 C 0.23 9.13 6.76 38.20 0.26 9.39 15 15 N -0.86 -22.61 9.04 -51.17 -0.46 -23.07 15 16 C -0.34 -15.87 5.46 -19.12 -0.10 -15.98 15 17 C 0.34 13.67 5.01 71.24 0.36 14.03 15 18 F -0.22 -9.83 16.65 44.97 0.75 -9.08 15 19 F -0.22 -9.18 15.88 44.97 0.71 -8.47 15 20 H 0.29 14.25 8.30 -92.71 -0.77 13.48 15 21 H 0.37 15.75 9.06 -74.06 -0.67 15.08 15 22 H 0.16 5.52 8.06 -2.91 -0.02 5.50 15 23 H 0.41 8.24 8.85 -92.70 -0.82 7.42 15 24 H 0.40 8.70 6.56 -92.71 -0.61 8.09 15 25 H 0.13 3.84 5.77 -2.39 -0.01 3.83 15 Total: -1.00 -67.87 230.71 0.89 -66.98 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.80 Total: 29.42 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 2.51 Total: -2.91 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -3.39 Total: -91.72 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.92 Total: -25.05 kcal Atomic # 9 Polarization: -19.01 SS G_CDS: 1.46 Total: -17.55 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.83 kcal Total: -67.87 0.89 -66.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595986.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.507 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds