Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47568 * 240.00317 * 3 2 1 5 5 H 1.48507 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47218 * 119.99603 * 3 2 1 7 7 C 1.39846 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00246 * 166.34295 * 7 2 1 9 9 C 1.41191 * 119.99855 * 346.34206 * 7 2 1 10 10 C 1.41287 * 120.54185 * 331.88575 * 9 7 2 11 11 C 1.36891 * 118.37126 * 179.97438 * 10 9 7 12 12 O 1.35978 * 120.29771 * 180.02562 * 11 10 9 13 13 C 1.40236 * 119.40327 * 0.02562 * 11 10 9 14 14 N 1.38482 * 119.46812 * 179.97438 * 13 11 10 15 15 N 1.32647 * 121.06973 * 359.97375 * 13 11 10 16 16 C 1.31530 * 121.77599 * 0.02562 * 15 13 11 17 17 C 1.50695 * 119.76549 * 180.02562 * 16 15 13 18 18 F 1.39900 * 109.47208 * 20.61185 * 17 16 15 19 19 F 1.39900 * 109.47309 * 140.61615 * 17 16 15 20 20 H 0.96998 * 120.00216 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.81217 * 0.25977 * 10 9 7 22 22 H 0.96703 * 113.99839 * 90.00450 * 12 11 10 23 23 H 0.97007 * 119.99633 * 359.97438 * 14 13 11 24 24 H 0.96999 * 120.00835 * 180.02562 * 14 13 11 25 25 H 1.09003 * 109.46941 * 260.60919 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0084 -1.2111 -0.0005 8 1 3.0654 -1.2242 -0.2214 9 6 1.3324 -2.4167 0.2876 10 6 0.1895 -2.4181 1.1184 11 6 -0.4317 -3.6121 1.3680 12 8 -1.5349 -3.6587 2.1616 13 6 0.0799 -4.7868 0.7979 14 7 -0.5472 -5.9955 1.0500 15 7 1.1547 -4.7590 0.0211 16 6 1.7860 -3.6368 -0.2480 17 6 3.0026 -3.6575 -1.1369 18 9 2.9960 -4.8238 -1.9095 19 9 2.9842 -2.5403 -1.9788 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1874 -1.4991 1.5422 22 1 -2.3684 -3.5527 1.6830 23 1 -1.3335 -6.0249 1.6172 24 1 -0.1998 -6.8129 0.6600 25 1 3.9023 -3.6341 -0.5219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238626820.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = -116.630012 kcal Electronic energy + Delta-G solvation = -16077.018030 eV Core-core repulsion = 12919.067177 eV Total energy + Delta-G solvation = -3157.950852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.87834 -45.89767 -39.08154 -36.25283 -34.54825 -32.90385 -30.21954 -29.18599 -26.15744 -24.06356 -21.62360 -20.95613 -18.11258 -16.82183 -16.75627 -16.69625 -16.31078 -15.62097 -15.07727 -14.51323 -14.07005 -13.81935 -12.84243 -12.75539 -12.52078 -12.30870 -12.12769 -11.66455 -11.59791 -11.29139 -10.86920 -10.62896 -10.47439 -9.82758 -9.61152 -9.11470 -8.31682 -8.25436 -6.98843 -6.75540 -4.41498 2.27962 2.77005 3.02744 3.06029 3.16264 3.86507 4.43051 4.51710 4.84360 5.05340 5.32655 5.40369 5.75572 6.02845 6.30199 6.68224 6.89665 7.00098 7.14329 7.44651 7.58894 8.03179 8.20575 8.41882 8.51688 8.64310 8.71100 9.45376 10.06440 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.012564 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.748622 B = 2228.078252 C = 3331.066577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.441 4.441 8 H 0.087 0.913 9 C 0.071 3.929 10 C -0.107 4.107 11 C 0.024 3.976 12 O -0.502 6.502 13 C 0.272 3.728 14 N -0.869 5.869 15 N -0.482 5.482 16 C -0.064 4.064 17 C 0.350 3.650 18 F -0.210 7.210 19 F -0.193 7.193 20 H 0.284 0.716 21 H 0.139 0.861 22 H 0.370 0.630 23 H 0.396 0.604 24 H 0.388 0.612 25 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -2.171 1.123 2.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.105 0.895 9 C 0.065 3.935 10 C -0.134 4.134 11 C -0.025 4.025 12 O -0.309 6.309 13 C 0.033 3.967 14 N -0.419 5.419 15 N -0.199 5.199 16 C -0.201 4.201 17 C 0.295 3.705 18 F -0.191 7.191 19 F -0.174 7.174 20 H 0.095 0.905 21 H 0.156 0.844 22 H 0.223 0.777 23 H 0.224 0.776 24 H 0.216 0.784 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.708 -2.713 1.146 3.029 hybrid contribution -0.680 1.305 -0.098 1.474 sum 0.029 -1.408 1.048 1.756 Atomic orbital electron populations 1.69768 1.07618 1.29730 1.35390 1.25898 0.94842 1.01545 0.92038 0.86234 0.80047 0.79634 0.80169 1.18649 1.20296 1.18721 1.19464 0.97062 0.90134 1.40446 0.89461 1.17861 0.92331 0.92499 0.90794 1.21594 0.98210 0.96241 0.97346 1.18567 0.92052 0.92630 0.99289 1.84796 1.15074 1.95346 1.35658 1.17999 0.93659 0.86256 0.98767 1.41439 1.34818 1.05736 1.59871 1.66100 1.07599 1.30360 1.15837 1.20850 1.02379 0.90134 1.06758 1.19594 0.97517 0.70420 0.82934 1.92902 1.97865 1.50251 1.78094 1.92988 1.97699 1.53030 1.73684 0.90549 0.84369 0.77706 0.77590 0.78448 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.74 10.98 55.54 0.61 -19.13 15 2 C 0.07 1.79 5.22 -17.34 -0.09 1.70 15 3 Si 0.92 18.10 29.58 -169.99 -5.03 13.07 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 7 C -0.44 -11.09 7.36 -37.86 -0.28 -11.37 15 8 H 0.09 2.09 6.61 -52.49 -0.35 1.75 15 9 C 0.07 1.83 5.53 -106.66 -0.59 1.24 15 10 C -0.11 -2.68 8.64 -38.91 -0.34 -3.01 15 11 C 0.02 0.55 6.70 -39.32 -0.26 0.29 15 12 O -0.50 -9.72 12.71 -19.67 -0.25 -9.97 15 13 C 0.27 6.16 7.76 -154.90 -1.20 4.96 15 14 N -0.87 -15.54 9.04 31.29 0.28 -15.26 15 15 N -0.48 -11.72 9.87 -7.90 -0.08 -11.79 15 16 C -0.06 -1.59 6.65 -81.77 -0.54 -2.13 15 17 C 0.35 7.66 5.19 36.00 0.19 7.85 15 18 F -0.21 -4.62 16.97 2.25 0.04 -4.58 15 19 F -0.19 -4.44 14.75 2.25 0.03 -4.41 15 20 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 21 H 0.14 3.53 6.36 -52.49 -0.33 3.20 15 22 H 0.37 5.56 9.06 45.56 0.41 5.97 15 23 H 0.40 6.08 8.13 -40.82 -0.33 5.75 15 24 H 0.39 6.36 8.95 -40.82 -0.37 5.99 15 25 H 0.10 1.82 8.14 -51.93 -0.42 1.40 15 LS Contribution 233.82 15.07 3.52 3.52 Total: -1.00 -28.84 233.82 -4.51 -33.35 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.52 Total: 15.67 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.12 Total: -0.47 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.81 Total: -46.18 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.25 Total: -9.97 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.84 -4.51 -33.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626820.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.284 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds