Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47568 * 240.00317 * 3 2 1 5 5 H 1.48507 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47218 * 119.99603 * 3 2 1 7 7 C 1.39846 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00246 * 166.34295 * 7 2 1 9 9 C 1.41191 * 119.99855 * 346.34206 * 7 2 1 10 10 C 1.41287 * 120.54185 * 331.88575 * 9 7 2 11 11 C 1.36891 * 118.37126 * 179.97438 * 10 9 7 12 12 O 1.35978 * 120.29771 * 180.02562 * 11 10 9 13 13 C 1.40236 * 119.40327 * 0.02562 * 11 10 9 14 14 N 1.38482 * 119.46812 * 179.97438 * 13 11 10 15 15 N 1.32647 * 121.06973 * 359.97375 * 13 11 10 16 16 C 1.31530 * 121.77599 * 0.02562 * 15 13 11 17 17 C 1.50695 * 119.76549 * 180.02562 * 16 15 13 18 18 F 1.39900 * 109.47208 * 20.61185 * 17 16 15 19 19 F 1.39900 * 109.47309 * 140.61615 * 17 16 15 20 20 H 0.96998 * 120.00216 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.81217 * 0.25977 * 10 9 7 22 22 H 0.96703 * 113.99839 * 90.00450 * 12 11 10 23 23 H 0.97007 * 119.99633 * 359.97438 * 14 13 11 24 24 H 0.96999 * 120.00835 * 180.02562 * 14 13 11 25 25 H 1.09003 * 109.46941 * 260.60919 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0084 -1.2111 -0.0005 8 1 3.0654 -1.2242 -0.2214 9 6 1.3324 -2.4167 0.2876 10 6 0.1895 -2.4181 1.1184 11 6 -0.4317 -3.6121 1.3680 12 8 -1.5349 -3.6587 2.1616 13 6 0.0799 -4.7868 0.7979 14 7 -0.5472 -5.9955 1.0500 15 7 1.1547 -4.7590 0.0211 16 6 1.7860 -3.6368 -0.2480 17 6 3.0026 -3.6575 -1.1369 18 9 2.9960 -4.8238 -1.9095 19 9 2.9842 -2.5403 -1.9788 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1874 -1.4991 1.5422 22 1 -2.3684 -3.5527 1.6830 23 1 -1.3335 -6.0249 1.6172 24 1 -0.1998 -6.8129 0.6600 25 1 3.9023 -3.6341 -0.5219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238626820.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = -137.942679 kcal Electronic energy + Delta-G solvation = -16077.942216 eV Core-core repulsion = 12919.067177 eV Total energy + Delta-G solvation = -3158.875039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.62174 -47.64731 -40.84557 -37.92861 -36.29786 -34.59393 -32.02551 -30.92960 -27.94472 -25.82330 -23.43941 -22.71697 -19.85317 -18.54481 -18.46919 -18.43330 -18.02686 -17.33065 -16.77160 -16.17722 -15.72949 -15.48690 -14.59412 -14.50963 -14.24976 -14.05651 -13.94343 -13.43447 -13.33005 -12.90590 -12.58334 -12.33195 -12.05636 -11.56327 -11.33261 -10.83417 -10.13565 -10.08363 -8.75635 -8.49185 -6.26135 0.46681 0.98096 1.43189 1.53547 1.56375 2.23179 2.66508 2.88045 3.19510 3.38580 3.56241 3.67819 4.01839 4.32427 4.55091 4.89651 5.08221 5.23496 5.37682 5.65820 5.75693 6.27346 6.59673 6.67475 6.79820 6.98670 7.05851 7.73738 8.30934 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.012564 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.748622 B = 2228.078252 C = 3331.066577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.046 3.954 10 C -0.128 4.128 11 C 0.028 3.972 12 O -0.498 6.498 13 C 0.269 3.731 14 N -0.850 5.850 15 N -0.497 5.497 16 C -0.084 4.084 17 C 0.349 3.651 18 F -0.212 7.212 19 F -0.202 7.202 20 H 0.290 0.710 21 H 0.126 0.874 22 H 0.393 0.607 23 H 0.410 0.590 24 H 0.399 0.601 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -2.243 1.423 2.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.496 4.496 8 H 0.109 0.891 9 C 0.040 3.960 10 C -0.155 4.155 11 C -0.022 4.022 12 O -0.307 6.307 13 C 0.029 3.971 14 N -0.401 5.401 15 N -0.215 5.215 16 C -0.220 4.220 17 C 0.295 3.705 18 F -0.193 7.193 19 F -0.183 7.183 20 H 0.100 0.900 21 H 0.143 0.857 22 H 0.249 0.751 23 H 0.241 0.759 24 H 0.227 0.773 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.747 -2.825 1.451 3.262 hybrid contribution -0.833 1.201 -0.148 1.469 sum -0.086 -1.624 1.304 2.084 Atomic orbital electron populations 1.69820 1.08885 1.30851 1.35926 1.26719 0.95571 1.04514 0.91215 0.85225 0.78767 0.75515 0.80178 1.18539 1.19468 1.18053 1.19693 0.97420 0.90824 1.41672 0.89101 1.18154 0.93060 0.93317 0.91502 1.21604 0.98993 0.96627 0.98312 1.18534 0.92791 0.92139 0.98752 1.84726 1.15336 1.95180 1.35438 1.18320 0.93276 0.87635 0.97896 1.41347 1.34701 1.04610 1.59464 1.66203 1.08340 1.30256 1.16733 1.21253 1.03418 0.90068 1.07270 1.19857 0.97982 0.69963 0.82708 1.92891 1.97885 1.50334 1.78191 1.92962 1.97745 1.53599 1.74013 0.89967 0.85673 0.75108 0.75948 0.77259 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.20 10.98 21.81 0.24 -40.96 15 2 C 0.03 1.66 5.22 85.22 0.44 2.11 15 3 Si 0.98 36.68 29.58 68.60 2.03 38.71 15 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 15 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 7 C -0.47 -23.56 7.36 23.38 0.17 -23.39 15 8 H 0.09 4.36 6.61 -2.91 -0.02 4.34 15 9 C 0.05 2.37 5.53 -21.19 -0.12 2.25 15 10 C -0.13 -6.46 8.64 22.70 0.20 -6.27 15 11 C 0.03 1.26 6.70 22.44 0.15 1.41 15 12 O -0.50 -18.34 12.71 -93.30 -1.19 -19.53 15 13 C 0.27 11.82 7.76 133.44 1.04 12.86 15 14 N -0.85 -28.37 9.04 -54.92 -0.50 -28.87 15 15 N -0.50 -23.74 9.87 -178.89 -1.77 -25.50 15 16 C -0.08 -4.12 6.65 43.22 0.29 -3.83 15 17 C 0.35 14.99 5.19 71.23 0.37 15.36 15 18 F -0.21 -9.11 16.97 44.97 0.76 -8.35 15 19 F -0.20 -9.23 14.75 44.97 0.66 -8.57 15 20 H 0.29 13.11 8.30 -92.71 -0.77 12.34 15 21 H 0.13 6.53 6.36 -2.91 -0.02 6.51 15 22 H 0.39 10.91 9.06 -74.06 -0.67 10.24 15 23 H 0.41 11.42 8.13 -92.70 -0.75 10.67 15 24 H 0.40 12.05 8.95 -92.71 -0.83 11.22 15 25 H 0.14 4.78 8.14 -2.39 -0.02 4.76 15 Total: -1.00 -60.67 233.82 1.82 -58.85 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.96 Total: 33.72 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 2.54 Total: 0.50 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -2.02 Total: -95.33 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.19 Total: -19.53 kcal Atomic # 9 Polarization: -18.34 SS G_CDS: 1.43 Total: -16.92 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Total: -60.67 1.82 -58.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626820.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.093 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds