Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47098 * 269.99927 * 3 2 1 5 5 H 1.48501 * 109.47193 * 29.99783 * 3 2 1 6 6 H 1.48494 * 109.47277 * 149.99728 * 3 2 1 7 7 C 1.39921 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00095 * 194.47692 * 7 2 1 9 9 C 1.41002 * 119.99829 * 14.48849 * 7 2 1 10 10 C 1.40966 * 120.67805 * 24.91043 * 9 7 2 11 11 C 1.38381 * 118.24520 * 179.97438 * 10 9 7 12 12 O 1.35982 * 120.23543 * 180.02562 * 11 10 9 13 13 C 1.39205 * 119.52505 * 359.97438 * 11 10 9 14 14 C 1.50692 * 119.31595 * 179.97438 * 13 11 10 15 15 F 1.39901 * 109.47424 * 299.99916 * 14 13 11 16 16 F 1.39902 * 109.47429 * 60.00465 * 14 13 11 17 17 N 1.31959 * 121.35986 * 0.02978 * 13 11 10 18 18 C 1.32227 * 121.92143 * 359.96914 * 17 13 11 19 19 N 1.38225 * 119.85052 * 180.02562 * 18 17 13 20 20 H 0.96991 * 120.00083 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.87223 * 0.25497 * 10 9 7 22 22 H 0.96693 * 114.00628 * 89.99670 * 12 11 10 23 23 H 1.09007 * 109.46909 * 180.02562 * 14 13 11 24 24 H 0.96997 * 119.99686 * 0.02562 * 19 18 17 25 25 H 0.96994 * 119.99983 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4403 0.7001 7 6 2.0085 -1.2117 0.0005 8 1 3.0628 -1.2264 0.2344 9 6 1.3372 -2.4136 -0.3044 10 6 0.1683 -2.4045 -1.0922 11 6 -0.4496 -3.6132 -1.3611 12 8 -1.5792 -3.6515 -2.1172 13 6 0.0940 -4.7896 -0.8528 14 6 -0.5831 -6.1031 -1.1480 15 9 -1.8882 -6.0785 -0.6447 16 9 -0.6205 -6.3080 -2.5314 17 7 1.1893 -4.7781 -0.1170 18 6 1.8245 -3.6554 0.1739 19 7 2.9689 -3.6932 0.9482 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2318 -1.4791 -1.4795 22 1 -1.4150 -3.7514 -3.0649 23 1 -0.0269 -6.9128 -0.6754 24 1 3.3045 -4.5419 1.2764 25 1 3.4363 -2.8709 1.1632 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238630187.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -142.821352 kcal Electronic energy + Delta-G solvation = -15952.691729 eV Core-core repulsion = 12793.605135 eV Total energy + Delta-G solvation = -3159.086594 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.77170 -47.78423 -40.71098 -38.13818 -36.09491 -34.75460 -32.48482 -29.74281 -28.93525 -25.62564 -23.50312 -22.71679 -19.85278 -18.77524 -18.55444 -18.26397 -18.01716 -17.41620 -16.90196 -16.14176 -15.81672 -15.47644 -14.76059 -14.58972 -14.27966 -14.20000 -13.79194 -13.50151 -13.38776 -13.01849 -12.60121 -12.29597 -11.95133 -11.77284 -11.26427 -11.10802 -10.20564 -9.99809 -8.79824 -8.48436 -6.36488 0.51386 0.97573 1.41542 1.49936 1.55936 2.16383 2.60082 2.75511 3.25938 3.37342 3.55101 3.69592 3.97965 4.34569 4.56640 4.83915 5.03720 5.08956 5.51485 5.58179 5.81155 6.17836 6.55298 6.66770 6.88698 6.89837 7.11550 7.76906 8.20397 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.008575 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.096213 B = 3264.532057 C = 3748.360280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.029 3.971 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.456 4.456 8 H 0.103 0.897 9 C 0.031 3.969 10 C -0.194 4.194 11 C 0.069 3.931 12 O -0.505 6.505 13 C -0.105 4.105 14 C 0.348 3.652 15 F -0.213 7.213 16 F -0.209 7.209 17 N -0.507 5.507 18 C 0.300 3.700 19 N -0.840 5.840 20 H 0.292 0.708 21 H 0.121 0.879 22 H 0.390 0.610 23 H 0.139 0.861 24 H 0.399 0.601 25 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.160 -2.189 -1.013 4.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.485 4.485 8 H 0.120 0.880 9 C 0.023 3.977 10 C -0.220 4.220 11 C 0.020 3.980 12 O -0.314 6.314 13 C -0.237 4.237 14 C 0.294 3.706 15 F -0.194 7.194 16 F -0.190 7.190 17 N -0.227 5.227 18 C 0.056 3.944 19 N -0.390 5.390 20 H 0.103 0.897 21 H 0.139 0.861 22 H 0.245 0.755 23 H 0.157 0.843 24 H 0.229 0.771 25 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.795 -2.785 -0.261 4.715 hybrid contribution -0.051 1.466 -0.689 1.620 sum 3.744 -1.320 -0.950 4.081 Atomic orbital electron populations 1.69897 1.09476 1.31216 1.33270 1.26964 0.95480 1.05176 0.91168 0.85001 0.79175 0.74942 0.79484 1.18949 1.19896 1.16879 1.19747 0.97737 0.90744 1.40284 0.87954 1.18330 0.93767 0.93068 0.92498 1.21621 0.99655 0.96501 1.04180 1.18978 0.88122 0.93012 0.97908 1.84761 1.28491 1.95896 1.22272 1.20764 0.98476 0.93577 1.10857 1.19811 0.78908 0.96576 0.75345 1.92938 1.41613 1.97719 1.87156 1.92906 1.96672 1.95937 1.33520 1.66066 1.09118 1.29700 1.17837 1.18605 0.91516 0.88603 0.95725 1.41423 1.27165 1.11824 1.58605 0.89693 0.86101 0.75461 0.84344 0.77147 0.75796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.38 10.83 21.83 0.24 -40.15 15 2 C 0.03 1.33 5.23 85.24 0.45 1.77 15 3 Si 0.99 34.00 29.58 68.60 2.03 36.02 15 4 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 5 H -0.27 -9.23 7.11 99.48 0.71 -8.53 15 6 H -0.25 -7.78 7.11 99.48 0.71 -7.07 15 7 C -0.46 -21.44 8.53 23.36 0.20 -21.24 15 8 H 0.10 4.27 6.66 -2.91 -0.02 4.25 15 9 C 0.03 1.58 5.60 -21.07 -0.12 1.47 15 10 C -0.19 -10.20 8.72 22.97 0.20 -10.00 15 11 C 0.07 3.41 6.58 22.54 0.15 3.55 15 12 O -0.51 -22.66 12.36 -93.34 -1.15 -23.82 15 13 C -0.10 -4.90 6.30 42.77 0.27 -4.63 15 14 C 0.35 13.65 5.21 71.23 0.37 14.02 15 15 F -0.21 -8.92 16.93 44.97 0.76 -8.16 15 16 F -0.21 -7.87 16.93 44.97 0.76 -7.11 15 17 N -0.51 -23.56 10.24 -179.10 -1.83 -25.39 15 18 C 0.30 13.93 7.79 134.02 1.04 14.97 15 19 N -0.84 -30.41 8.97 -54.34 -0.49 -30.89 15 20 H 0.29 13.17 8.30 -92.71 -0.77 12.40 15 21 H 0.12 6.65 6.18 -2.91 -0.02 6.63 15 22 H 0.39 13.75 9.06 -74.06 -0.67 13.08 15 23 H 0.14 4.56 8.10 -2.38 -0.02 4.54 15 24 H 0.40 12.29 8.95 -92.71 -0.83 11.46 15 25 H 0.41 13.50 7.02 -92.71 -0.65 12.85 15 Total: -1.00 -60.21 235.40 2.02 -58.20 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.86 Total: 41.37 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 2.56 Total: -0.08 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -2.09 Total: -96.43 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.15 Total: -23.82 kcal Atomic # 9 Polarization: -16.79 SS G_CDS: 1.52 Total: -15.26 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.02 kcal Total: -60.21 2.02 -58.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238630187.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.624 kcal (2) G-P(sol) polarization free energy of solvation -60.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds