Wall clock time and date at job start Mon Mar 30 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30781 * 1 3 3 Si 1.86795 * 120.00328 * 2 1 4 4 H 1.48505 * 109.46850 * 83.20284 * 3 2 1 5 5 H 1.48498 * 109.47352 * 203.19835 * 3 2 1 6 6 H 1.48496 * 109.47050 * 323.20610 * 3 2 1 7 7 C 1.40027 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99637 * 21.95444 * 7 2 1 9 9 C 1.41237 * 120.00277 * 201.95095 * 7 2 1 10 10 C 1.41296 * 121.03048 * 24.99558 * 9 7 2 11 11 C 1.36292 * 119.22067 * 179.74969 * 10 9 7 12 12 C 1.50699 * 119.27011 * 180.27978 * 11 10 9 13 13 F 1.39899 * 109.46569 * 210.26490 * 12 11 10 14 14 F 1.39902 * 109.46981 * 330.26030 * 12 11 10 15 15 N 1.32292 * 121.45569 * 0.54161 * 11 10 9 16 16 C 1.32241 * 122.31290 * 359.73838 * 15 11 10 17 17 N 1.39253 * 119.71743 * 179.97438 * 16 15 11 18 18 C 1.39615 * 120.57414 * 359.97093 * 16 15 11 19 19 O 1.35694 * 120.75096 * 180.02562 * 18 16 15 20 20 H 0.97003 * 120.00301 * 173.06461 * 1 2 3 21 21 H 1.08002 * 120.38794 * 0.02562 * 10 9 7 22 22 H 1.08989 * 109.47202 * 90.26211 * 12 11 10 23 23 H 0.97005 * 120.00194 * 179.97438 * 17 16 15 24 24 H 0.97001 * 119.99605 * 359.97143 * 17 16 15 25 25 H 0.96696 * 114.00568 * 270.02132 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 2.3459 2.1291 1.3903 5 1 3.6038 1.4029 -0.5515 6 1 1.5185 2.6069 -0.8385 7 6 2.0079 -1.2127 0.0005 8 1 1.5265 -2.1142 -0.3488 9 6 3.3435 -1.2569 0.4578 10 6 3.8323 -0.2976 1.3728 11 6 5.1261 -0.3782 1.7936 12 6 5.6467 0.6406 2.7744 13 9 7.0154 0.8364 2.5608 14 9 4.9687 1.8509 2.5935 15 7 5.9364 -1.3281 1.3562 16 6 5.5430 -2.2520 0.4958 17 7 6.4418 -3.2270 0.0708 18 6 4.2341 -2.2585 0.0098 19 8 3.8265 -3.2052 -0.8728 20 1 -0.4851 -0.8339 -0.1014 21 1 3.1869 0.4877 1.7378 22 1 5.4852 0.2821 3.7908 23 1 6.1575 -3.9069 -0.5600 24 1 7.3522 -3.2262 0.4055 25 1 3.9551 -2.9606 -1.7994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238634052.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:20 Heat of formation + Delta-G solvation = -147.619895 kcal Electronic energy + Delta-G solvation = -16072.962385 eV Core-core repulsion = 12913.667711 eV Total energy + Delta-G solvation = -3159.294674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.90004 -47.91015 -40.95411 -37.74754 -36.51004 -35.06565 -32.69568 -30.67549 -27.51411 -26.71779 -23.48817 -22.49160 -20.41584 -19.17034 -18.55941 -18.42203 -18.28427 -17.46473 -16.85805 -16.23162 -16.05995 -15.52146 -15.03125 -14.75074 -14.46129 -14.36841 -14.21522 -13.78258 -13.52763 -12.87659 -12.46699 -12.21447 -11.85801 -11.60261 -11.40420 -11.11457 -10.26071 -10.05122 -9.46429 -8.58020 -6.85255 0.32500 0.77335 1.37256 1.50637 1.71308 2.07705 2.44861 2.54747 3.00009 3.19902 3.27111 3.74120 3.79294 4.08022 4.39266 4.64665 4.84594 5.04823 5.30830 5.41682 5.53881 6.06170 6.18874 6.45084 6.57779 6.74683 7.16096 7.54061 7.79606 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.015254 C = 0.009234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.505050 B = 1835.126491 C = 3031.631949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.024 3.976 3 Si 1.093 2.907 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.061 0.939 9 C 0.100 3.900 10 C -0.291 4.291 11 C 0.095 3.905 12 C 0.328 3.672 13 F -0.199 7.199 14 F -0.204 7.204 15 N -0.593 5.593 16 C 0.403 3.597 17 N -0.839 5.839 18 C -0.139 4.139 19 O -0.486 6.486 20 H 0.287 0.713 21 H 0.120 0.880 22 H 0.165 0.835 23 H 0.414 0.586 24 H 0.405 0.595 25 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.517 0.294 1.706 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.195 4.195 3 Si 0.913 3.087 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.092 3.908 10 C -0.317 4.317 11 C -0.038 4.038 12 C 0.274 3.726 13 F -0.180 7.180 14 F -0.185 7.185 15 N -0.319 5.319 16 C 0.167 3.833 17 N -0.385 5.385 18 C -0.192 4.192 19 O -0.292 6.292 20 H 0.098 0.902 21 H 0.138 0.862 22 H 0.182 0.818 23 H 0.245 0.755 24 H 0.235 0.765 25 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.867 1.568 2.584 9.368 hybrid contribution -0.851 -1.977 -1.224 2.476 sum 8.016 -0.409 1.360 8.141 Atomic orbital electron populations 1.70546 1.08466 1.33664 1.30530 1.28260 0.95653 1.06471 0.89149 0.83338 0.74674 0.70909 0.79744 1.17558 1.19524 1.19812 1.20519 0.97098 0.97101 1.39212 0.92052 1.18167 0.92918 0.90009 0.89719 1.21229 0.97490 1.06047 1.06942 1.20686 0.90938 0.94925 0.97253 1.20410 0.72772 0.78959 1.00466 1.92954 1.32840 1.95467 1.96738 1.92967 1.80189 1.48238 1.97151 1.66530 1.37231 1.07944 1.20194 1.18480 0.86906 0.88063 0.89887 1.41891 1.13021 1.31225 1.52403 1.18743 0.91948 1.01965 1.06558 1.84752 1.85843 1.40390 1.18206 0.90188 0.86216 0.81824 0.75498 0.76477 0.77862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.26 13.65 21.84 0.30 -41.96 15 2 C 0.02 1.22 5.40 85.28 0.46 1.68 15 3 Si 1.09 47.66 24.90 68.60 1.71 49.36 15 4 H -0.25 -10.24 6.69 99.48 0.67 -9.58 15 5 H -0.27 -12.05 6.87 99.48 0.68 -11.37 15 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 7 C -0.51 -27.27 9.15 23.44 0.21 -27.06 15 8 H 0.06 3.50 7.89 -2.91 -0.02 3.48 15 9 C 0.10 5.07 5.22 -21.03 -0.11 4.96 15 10 C -0.29 -13.66 6.61 22.57 0.15 -13.52 15 11 C 0.10 4.05 6.54 42.04 0.27 4.32 15 12 C 0.33 11.16 5.71 71.24 0.41 11.57 15 13 F -0.20 -6.97 17.04 44.97 0.77 -6.20 15 14 F -0.20 -7.28 16.40 44.97 0.74 -6.54 15 15 N -0.59 -25.38 9.94 -181.93 -1.81 -27.18 15 16 C 0.40 16.87 7.78 133.14 1.04 17.91 15 17 N -0.84 -26.21 9.08 -55.05 -0.50 -26.71 15 18 C -0.14 -6.44 6.81 23.36 0.16 -6.28 15 19 O -0.49 -20.34 12.19 -90.14 -1.10 -21.44 15 20 H 0.29 14.72 8.73 -92.71 -0.81 13.91 15 21 H 0.12 5.51 3.97 -2.91 -0.01 5.50 15 22 H 0.16 4.11 8.14 -2.39 -0.02 4.09 15 23 H 0.41 11.18 8.19 -92.70 -0.76 10.42 15 24 H 0.41 10.86 8.95 -92.71 -0.83 10.03 15 25 H 0.37 12.47 9.06 -74.06 -0.67 11.80 15 Total: -1.00 -60.86 232.00 1.63 -59.24 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -1.07 Total: 27.85 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 2.59 Total: -6.41 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -2.01 Total: -95.85 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.10 Total: -21.44 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 1.50 Total: -12.75 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.71 Total: 49.36 kcal Total: -60.86 1.63 -59.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238634052.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.384 kcal (2) G-P(sol) polarization free energy of solvation -60.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds