Wall clock time and date at job start Mon Mar 30 2020 02:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30923 * 1 3 3 Si 1.86802 * 119.99903 * 2 1 4 4 H 1.48503 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47265 * 300.00115 * 3 2 1 6 6 H 1.48502 * 109.46893 * 60.00114 * 3 2 1 7 7 C 1.39919 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 200.40925 * 7 2 1 9 9 C 1.40898 * 119.99563 * 20.40986 * 7 2 1 10 10 C 1.41620 * 120.75481 * 217.82577 * 9 7 2 11 11 N 1.38196 * 119.87800 * 0.02562 * 10 9 7 12 12 N 1.32215 * 120.24475 * 180.02562 * 10 9 7 13 13 C 1.32156 * 122.02882 * 359.97438 * 12 10 9 14 14 C 1.50704 * 119.22428 * 180.02562 * 13 12 10 15 15 F 1.39896 * 109.47711 * 29.99834 * 14 13 12 16 16 F 1.39902 * 109.47165 * 149.99934 * 14 13 12 17 17 C 1.38205 * 121.54104 * 359.73327 * 13 12 10 18 18 C 1.38843 * 119.55075 * 0.54625 * 17 13 12 19 19 O 1.35572 * 120.92856 * 179.74841 * 18 17 13 20 20 H 0.96992 * 120.00405 * 359.97438 * 1 2 3 21 21 H 0.97003 * 119.99926 * 0.02562 * 11 10 9 22 22 H 0.96994 * 119.99902 * 179.97438 * 11 10 9 23 23 H 1.09008 * 109.46685 * 269.99563 * 14 13 12 24 24 H 1.08007 * 120.22248 * 180.28633 * 17 13 12 25 25 H 0.96697 * 114.00360 * 274.79479 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.7032 1.3464 -0.0006 5 1 1.8845 2.3965 -1.2124 6 1 1.8844 2.3964 1.2125 7 6 2.0089 -1.2117 0.0005 8 1 3.0381 -1.2409 0.3267 9 6 1.3707 -2.3938 -0.4245 10 6 1.6237 -3.6269 0.2245 11 7 2.5052 -3.6772 1.2876 12 7 1.0197 -4.7301 -0.1831 13 6 0.1690 -4.7307 -1.1944 14 6 -0.4843 -6.0251 -1.6057 15 9 -0.6175 -6.8560 -0.4881 16 9 -1.7486 -5.7594 -2.1425 17 6 -0.1401 -3.5711 -1.8798 18 6 0.4619 -2.3759 -1.5099 19 8 0.1830 -1.2228 -2.1662 20 1 -0.4850 0.8399 0.0004 21 1 2.9491 -2.8688 1.5883 22 1 2.6795 -4.5207 1.7335 23 1 0.1321 -6.5208 -2.3557 24 1 -0.8420 -3.5952 -2.7004 25 1 0.7158 -1.0839 -2.9611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238637868.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:18 Heat of formation + Delta-G solvation = -135.031859 kcal Electronic energy + Delta-G solvation = -15968.152429 eV Core-core repulsion = 12809.403613 eV Total energy + Delta-G solvation = -3158.748816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.77578 -47.80546 -40.63761 -37.78946 -35.87452 -34.74025 -31.81297 -30.53038 -28.69757 -25.63750 -23.10527 -22.75117 -19.35963 -19.12062 -18.53203 -18.24979 -17.72043 -17.04211 -16.67278 -16.32589 -15.55679 -15.51542 -14.92664 -14.64050 -14.25831 -14.14753 -14.05574 -13.64572 -13.20431 -12.87954 -12.61722 -12.28596 -11.97642 -11.28014 -11.09890 -10.84775 -10.11558 -9.66861 -8.73012 -8.44194 -6.22162 0.64419 0.95485 1.44980 1.48611 1.58556 2.25165 2.70685 2.86339 3.20736 3.45987 3.54420 3.70975 4.19048 4.24330 4.53928 4.85245 5.07754 5.22345 5.26930 5.66272 5.85642 6.23686 6.61917 6.84454 6.89626 7.05993 7.42719 7.80473 8.41422 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.041150 B = 0.008788 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.272447 B = 3185.400189 C = 3686.488285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.052 3.948 3 Si 0.978 3.022 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.482 4.482 8 H 0.089 0.911 9 C 0.001 3.999 10 C 0.320 3.680 11 N -0.840 5.840 12 N -0.532 5.532 13 C -0.050 4.050 14 C 0.344 3.656 15 F -0.211 7.211 16 F -0.211 7.211 17 C -0.185 4.185 18 C 0.053 3.947 19 O -0.473 6.473 20 H 0.284 0.716 21 H 0.410 0.590 22 H 0.398 0.602 23 H 0.154 0.846 24 H 0.124 0.876 25 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -2.633 -3.063 5.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.168 4.168 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.512 4.512 8 H 0.107 0.893 9 C -0.008 4.008 10 C 0.076 3.924 11 N -0.389 5.389 12 N -0.252 5.252 13 C -0.182 4.182 14 C 0.290 3.710 15 F -0.192 7.192 16 F -0.192 7.192 17 C -0.209 4.209 18 C 0.001 3.999 19 O -0.280 6.280 20 H 0.095 0.905 21 H 0.241 0.759 22 H 0.227 0.773 23 H 0.171 0.829 24 H 0.142 0.858 25 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.124 -3.219 -2.266 5.025 hybrid contribution 0.234 1.471 -0.409 1.544 sum 3.358 -1.748 -2.674 4.635 Atomic orbital electron populations 1.69834 1.09419 1.30424 1.31794 1.26509 0.94931 1.03793 0.91534 0.85232 0.79639 0.76882 0.78298 1.17696 1.19681 1.20055 1.19270 0.99139 0.91844 1.40901 0.89287 1.18645 0.95157 0.93199 0.93750 1.18647 0.94053 0.89003 0.90684 1.41486 1.49346 1.13290 1.34772 1.66172 1.12533 1.30074 1.16458 1.20491 1.03442 0.94661 0.99617 1.20186 0.80265 0.86538 0.84045 1.92918 1.96254 1.73350 1.56680 1.92931 1.45131 1.94884 1.86272 1.21495 1.03204 0.92553 1.03601 1.18430 1.01719 0.84718 0.95036 1.84863 1.62733 1.38375 1.42022 0.90541 0.75859 0.77328 0.82924 0.85814 0.77690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.88 11.20 21.83 0.24 -40.64 15 2 C 0.05 2.45 4.46 85.24 0.38 2.83 15 3 Si 0.98 35.97 29.61 68.60 2.03 38.00 15 4 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15 6 H -0.28 -9.98 7.11 99.48 0.71 -9.28 15 7 C -0.48 -23.33 8.08 23.33 0.19 -23.14 15 8 H 0.09 3.99 7.21 -2.91 -0.02 3.97 15 9 C 0.00 0.03 5.40 -20.97 -0.11 -0.08 15 10 C 0.32 15.15 7.79 134.01 1.04 16.20 15 11 N -0.84 -32.40 8.97 -54.43 -0.49 -32.89 15 12 N -0.53 -25.07 9.94 -179.83 -1.79 -26.86 15 13 C -0.05 -2.21 6.59 42.50 0.28 -1.93 15 14 C 0.34 12.38 5.71 71.24 0.41 12.78 15 15 F -0.21 -8.22 17.04 44.97 0.77 -7.45 15 16 F -0.21 -7.71 16.41 44.97 0.74 -6.97 15 17 C -0.18 -8.47 9.35 22.41 0.21 -8.26 15 18 C 0.05 2.64 6.24 23.24 0.15 2.78 15 19 O -0.47 -22.20 10.49 -88.80 -0.93 -23.13 15 20 H 0.28 13.60 8.30 -92.71 -0.77 12.83 15 21 H 0.41 14.68 7.28 -92.71 -0.68 14.01 15 22 H 0.40 13.32 8.95 -92.71 -0.83 12.49 15 23 H 0.15 4.10 8.14 -2.38 -0.02 4.08 15 24 H 0.12 5.16 7.55 -2.91 -0.02 5.14 15 25 H 0.37 13.75 9.06 -74.06 -0.67 13.08 15 Total: -1.00 -61.99 235.11 2.23 -59.77 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.89 Total: 38.98 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 2.54 Total: 1.18 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -2.03 Total: -100.38 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.93 Total: -23.13 kcal Atomic # 9 Polarization: -15.92 SS G_CDS: 1.50 Total: -14.42 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -61.99 2.23 -59.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238637868.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.266 kcal (2) G-P(sol) polarization free energy of solvation -61.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds