Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86796 * 119.99943 * 2 1 4 4 H 1.48502 * 109.47046 * 275.38673 * 3 2 1 5 5 H 1.48504 * 109.47426 * 35.38474 * 3 2 1 6 6 H 1.48494 * 109.47053 * 155.38788 * 3 2 1 7 7 C 1.39859 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00368 * 342.14656 * 7 2 1 9 9 C 1.41257 * 119.99727 * 162.13428 * 7 2 1 10 10 C 1.41203 * 120.56617 * 329.99411 * 9 7 2 11 11 C 1.38167 * 118.22193 * 180.27271 * 10 9 7 12 12 N 1.39878 * 120.37434 * 179.74148 * 11 10 9 13 13 C 1.40168 * 119.25000 * 359.47468 * 11 10 9 14 14 O 1.35544 * 119.46786 * 180.27335 * 13 11 10 15 15 N 1.32411 * 121.07490 * 0.24752 * 13 11 10 16 16 C 1.31533 * 121.96227 * 0.02562 * 15 13 11 17 17 C 1.50701 * 119.69402 * 180.02562 * 16 15 13 18 18 F 1.39900 * 109.46822 * 120.00544 * 17 16 15 19 19 F 1.39904 * 109.47026 * 240.00220 * 17 16 15 20 20 H 0.97001 * 119.99949 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.88714 * 0.03877 * 10 9 7 22 22 H 0.97001 * 120.00107 * 179.72932 * 12 11 10 23 23 H 0.96999 * 120.00258 * 359.45240 * 12 11 10 24 24 H 0.96698 * 114.00279 * 89.99508 * 14 13 11 25 25 H 1.08998 * 109.47166 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3766 2.1121 -1.3939 5 1 1.5020 2.6172 0.8107 6 1 3.5928 1.4100 0.5831 7 6 2.0083 -1.2112 0.0005 8 1 1.5074 -2.1239 0.2877 9 6 3.3698 -1.2408 -0.3748 10 6 3.8783 -0.3093 -1.3061 11 6 5.2161 -0.3859 -1.6428 12 7 5.7659 0.5109 -2.5648 13 6 6.0174 -1.3688 -1.0458 14 8 7.3317 -1.4444 -1.3687 15 7 5.5116 -2.2245 -0.1711 16 6 4.2437 -2.1958 0.1778 17 6 3.7221 -3.1941 1.1790 18 9 3.2092 -2.5159 2.2899 19 9 2.7089 -3.9587 0.5906 20 1 -0.4850 0.8401 -0.0004 21 1 3.2377 0.4406 -1.7465 22 1 6.7067 0.4548 -2.7943 23 1 5.2055 1.1864 -2.9777 24 1 7.9067 -0.9090 -0.8049 25 1 4.5339 -3.8486 1.4962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238655028.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = -145.466788 kcal Electronic energy + Delta-G solvation = -16195.502177 eV Core-core repulsion = 13036.300868 eV Total energy + Delta-G solvation = -3159.201309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.66766 -47.65968 -40.93728 -37.84225 -35.91916 -35.72561 -32.79927 -30.63145 -27.95748 -25.84304 -24.10525 -22.46298 -19.89132 -19.44721 -18.73188 -17.94993 -17.64307 -17.46810 -17.35257 -16.46376 -16.07459 -15.36374 -14.94553 -14.56033 -14.28202 -14.08239 -14.05225 -13.65482 -13.40033 -12.85278 -12.74728 -12.29178 -12.18545 -11.95269 -11.64961 -11.37269 -10.19846 -9.98603 -9.03961 -8.51592 -6.69138 0.46036 0.64278 1.20651 1.36948 1.45515 2.05375 2.42615 2.77553 2.98405 3.24511 3.36921 3.67623 3.98110 4.34195 4.43422 4.56875 4.74667 5.02789 5.18323 5.43140 5.65241 6.08163 6.26888 6.43636 6.58550 7.01179 7.02423 7.34464 8.01355 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.020317 B = 0.015777 C = 0.009888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.813811 B = 1774.264700 C = 2830.947748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.050 3.950 3 Si 0.971 3.029 4 H -0.246 1.246 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.075 0.925 9 C 0.086 3.914 10 C -0.293 4.293 11 C 0.223 3.777 12 N -0.852 5.852 13 C 0.102 3.898 14 O -0.476 6.476 15 N -0.423 5.423 16 C -0.114 4.114 17 C 0.348 3.652 18 F -0.210 7.210 19 F -0.216 7.216 20 H 0.301 0.699 21 H 0.123 0.877 22 H 0.411 0.589 23 H 0.405 0.595 24 H 0.387 0.613 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.509 4.096 -1.537 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.169 4.169 3 Si 0.793 3.207 4 H -0.170 1.170 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.471 4.471 8 H 0.093 0.907 9 C 0.080 3.920 10 C -0.324 4.324 11 C 0.112 3.888 12 N -0.393 5.393 13 C -0.083 4.083 14 O -0.281 6.281 15 N -0.139 5.139 16 C -0.257 4.257 17 C 0.294 3.706 18 F -0.191 7.191 19 F -0.197 7.197 20 H 0.112 0.888 21 H 0.141 0.859 22 H 0.241 0.759 23 H 0.235 0.765 24 H 0.242 0.758 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.568 3.165 -1.605 9.274 hybrid contribution -0.558 1.493 -0.150 1.601 sum 8.009 4.658 -1.755 9.430 Atomic orbital electron populations 1.69726 1.09259 1.32330 1.32823 1.26979 0.95445 1.04520 0.89965 0.85408 0.79355 0.75883 0.80058 1.17047 1.19996 1.18252 1.19624 0.93324 0.96601 1.37550 0.90672 1.18165 0.93218 0.91223 0.89427 1.20749 0.94543 1.08708 1.08370 1.18493 0.92103 0.88589 0.89573 1.42222 1.13854 1.36085 1.47148 1.18013 0.85755 0.99419 1.05110 1.84813 1.13306 1.72596 1.57383 1.65856 1.14663 1.22420 1.10975 1.20921 0.89752 1.06629 1.08437 1.19800 0.84949 0.86461 0.79431 1.92927 1.89376 1.82554 1.54251 1.92908 1.65060 1.76418 1.85343 0.88762 0.85929 0.75859 0.76532 0.75846 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.35 13.93 21.81 0.30 -42.04 15 2 C 0.05 2.54 5.42 85.22 0.46 3.00 15 3 Si 0.97 39.91 24.53 68.60 1.68 41.59 15 4 H -0.25 -9.04 6.71 99.48 0.67 -8.38 15 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 6 H -0.26 -11.16 6.85 99.48 0.68 -10.47 15 7 C -0.44 -24.07 8.24 23.40 0.19 -23.88 15 8 H 0.08 4.47 6.36 -2.91 -0.02 4.45 15 9 C 0.09 4.33 5.08 -21.20 -0.11 4.23 15 10 C -0.29 -13.15 7.12 22.98 0.16 -12.99 15 11 C 0.22 8.73 6.79 38.31 0.26 8.99 15 12 N -0.85 -23.83 9.09 -50.92 -0.46 -24.29 15 13 C 0.10 4.17 7.77 85.07 0.66 4.83 15 14 O -0.48 -15.68 12.80 -88.49 -1.13 -16.82 15 15 N -0.42 -19.12 10.25 -294.17 -3.01 -22.13 15 16 C -0.11 -5.48 6.34 43.22 0.27 -5.20 15 17 C 0.35 15.24 5.08 71.24 0.36 15.60 15 18 F -0.21 -9.68 16.56 44.97 0.74 -8.93 15 19 F -0.22 -10.09 15.67 44.97 0.70 -9.39 15 20 H 0.30 13.77 8.30 -92.71 -0.77 13.00 15 21 H 0.12 5.25 4.82 -2.91 -0.01 5.24 15 22 H 0.41 9.29 8.20 -92.71 -0.76 8.53 15 23 H 0.41 9.72 8.85 -92.71 -0.82 8.90 15 24 H 0.39 8.94 9.06 -74.06 -0.67 8.27 15 25 H 0.14 4.98 8.11 -2.39 -0.02 4.97 15 Total: -1.00 -62.86 229.01 0.08 -62.78 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -1.02 Total: 24.64 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 2.27 Total: -5.41 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -3.17 Total: -88.47 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.13 Total: -16.82 kcal Atomic # 9 Polarization: -19.77 SS G_CDS: 1.45 Total: -18.32 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.68 Total: 41.59 kcal Total: -62.86 0.08 -62.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655028.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.685 kcal (2) G-P(sol) polarization free energy of solvation -62.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds