Wall clock time and date at job start Mon Mar 30 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86795 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47532 * 240.00112 * 3 2 1 5 5 H 1.48494 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47082 * 120.00237 * 3 2 1 7 7 C 1.39930 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 168.42640 * 7 2 1 9 9 C 1.41111 * 120.00077 * 348.43313 * 7 2 1 10 10 C 1.40939 * 120.65381 * 333.17375 * 9 7 2 11 11 C 1.38567 * 118.20747 * 180.27309 * 10 9 7 12 12 N 1.39896 * 120.28159 * 179.72521 * 11 10 9 13 13 C 1.39340 * 119.43568 * 359.74770 * 11 10 9 14 14 C 1.50701 * 119.35101 * 180.02562 * 13 11 10 15 15 F 1.39904 * 109.47278 * 194.99115 * 14 13 11 16 16 F 1.39903 * 109.46848 * 314.99201 * 14 13 11 17 17 N 1.31991 * 121.30583 * 0.02562 * 13 11 10 18 18 C 1.32024 * 121.96053 * 359.97438 * 17 13 11 19 19 O 1.35456 * 119.79672 * 179.97438 * 18 17 13 20 20 H 0.96992 * 119.99823 * 359.97438 * 1 2 3 21 21 H 1.07994 * 120.89242 * 0.02562 * 10 9 7 22 22 H 0.97000 * 119.99998 * 352.54261 * 12 11 10 23 23 H 0.96996 * 120.00357 * 172.53297 * 12 11 10 24 24 H 1.08997 * 109.47188 * 74.99160 * 14 13 11 25 25 H 0.96702 * 113.99854 * 84.91057 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6963 1.2126 7 6 2.0083 -1.2118 -0.0005 8 1 3.0719 -1.2213 -0.1882 9 6 1.3243 -2.4216 0.2440 10 6 0.1434 -2.4366 1.0132 11 6 -0.4839 -3.6536 1.2265 12 7 -1.6553 -3.7194 1.9884 13 6 0.0622 -4.8113 0.6760 14 6 -0.6220 -6.1337 0.9086 15 9 0.2504 -7.1752 0.5747 16 9 -0.9828 -6.2414 2.2560 17 7 1.1669 -4.7726 -0.0453 18 6 1.8079 -3.6429 -0.2819 19 8 2.9386 -3.6540 -1.0277 20 1 -0.4849 0.8400 0.0004 21 1 -0.2593 -1.5247 1.4287 22 1 -1.9725 -2.9328 2.4592 23 1 -2.1505 -4.5515 2.0459 24 1 -1.5154 -6.1948 0.2872 25 1 2.7813 -3.6154 -1.9811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238655450.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:46 Heat of formation + Delta-G solvation = -120.063473 kcal Electronic energy + Delta-G solvation = -15924.527711 eV Core-core repulsion = 12766.427973 eV Total energy + Delta-G solvation = -3158.099738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.27750 -46.29376 -38.83784 -36.00385 -34.36582 -33.33155 -30.70527 -27.95984 -26.98032 -23.98982 -21.62131 -20.95590 -17.81690 -17.53614 -16.97543 -16.74742 -16.01583 -15.55348 -15.38761 -14.78362 -14.10358 -13.75559 -13.13661 -12.81964 -12.54802 -12.31284 -12.21282 -11.89514 -11.50630 -11.26390 -10.79342 -10.54822 -10.39261 -10.25052 -9.91521 -9.52767 -8.25780 -7.99338 -7.03043 -6.59658 -4.69553 2.41912 2.85060 2.94239 2.97333 3.03417 3.74171 4.34069 4.42337 4.70661 4.88709 5.11594 5.41248 5.66834 5.79997 6.43763 6.63433 6.83685 6.89726 7.23926 7.40258 7.67244 8.00856 8.35850 8.38601 8.48953 8.58787 9.01636 9.37224 9.88355 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.039874 B = 0.008573 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.047918 B = 3265.143455 C = 3860.439453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.092 0.908 9 C 0.102 3.898 10 C -0.213 4.213 11 C 0.209 3.791 12 N -0.883 5.883 13 C -0.143 4.143 14 C 0.345 3.655 15 F -0.200 7.200 16 F -0.212 7.212 17 N -0.429 5.429 18 C 0.154 3.846 19 O -0.476 6.476 20 H 0.286 0.714 21 H 0.137 0.863 22 H 0.391 0.609 23 H 0.387 0.613 24 H 0.100 0.900 25 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 -1.090 0.645 4.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.150 4.150 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.452 4.452 8 H 0.110 0.890 9 C 0.095 3.905 10 C -0.243 4.243 11 C 0.104 3.896 12 N -0.425 5.425 13 C -0.282 4.282 14 C 0.290 3.710 15 F -0.181 7.181 16 F -0.194 7.194 17 N -0.146 5.146 18 C -0.034 4.034 19 O -0.279 6.279 20 H 0.097 0.903 21 H 0.154 0.846 22 H 0.218 0.782 23 H 0.217 0.783 24 H 0.117 0.883 25 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.419 -1.765 0.831 3.936 hybrid contribution -0.527 1.448 0.079 1.543 sum -3.946 -0.317 0.910 4.062 Atomic orbital electron populations 1.69804 1.07725 1.29932 1.32954 1.26111 0.94959 1.01950 0.92000 0.86141 0.79965 0.79038 0.80408 1.18580 1.20150 1.18509 1.19640 0.96905 0.89810 1.38844 0.88969 1.18287 0.91007 0.92235 0.88968 1.21007 1.01248 0.94952 1.07088 1.18216 0.86899 0.93992 0.90530 1.42486 1.27379 1.15247 1.57431 1.19596 1.00364 0.91588 1.16666 1.19841 0.90380 0.83365 0.77397 1.92929 1.72652 1.60353 1.92161 1.92886 1.92227 1.96376 1.37893 1.65864 1.04980 1.31270 1.12528 1.18950 0.92572 0.88052 1.03860 1.84758 1.27206 1.95753 1.20166 0.90330 0.84553 0.78157 0.78349 0.88319 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.40 10.79 55.55 0.60 -17.80 15 2 C 0.07 1.62 5.27 -17.33 -0.09 1.53 15 3 Si 0.92 17.36 29.58 -169.99 -5.03 12.34 15 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 5 H -0.28 -5.05 7.11 56.52 0.40 -4.65 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 7 C -0.42 -10.63 8.73 -37.86 -0.33 -10.96 15 8 H 0.09 2.27 7.67 -52.49 -0.40 1.87 15 9 C 0.10 2.66 5.59 -106.55 -0.60 2.07 15 10 C -0.21 -5.25 8.64 -38.44 -0.33 -5.58 15 11 C 0.21 4.70 6.65 -83.65 -0.56 4.14 15 12 N -0.88 -15.63 8.68 32.47 0.28 -15.35 15 13 C -0.14 -3.32 6.60 -82.11 -0.54 -3.86 15 14 C 0.34 6.65 5.11 36.01 0.18 6.83 15 15 F -0.20 -4.17 16.90 2.25 0.04 -4.13 15 16 F -0.21 -3.92 15.09 2.25 0.03 -3.88 15 17 N -0.43 -10.91 9.78 -8.68 -0.08 -11.00 15 18 C 0.15 3.97 7.80 -16.23 -0.13 3.84 15 19 O -0.48 -11.16 12.88 -18.06 -0.23 -11.40 15 20 H 0.29 6.10 8.30 -40.82 -0.34 5.76 15 21 H 0.14 3.37 6.20 -52.49 -0.33 3.05 15 22 H 0.39 6.21 8.86 -40.82 -0.36 5.85 15 23 H 0.39 6.06 6.45 -40.82 -0.26 5.80 15 24 H 0.10 1.55 8.14 -51.93 -0.42 1.12 15 25 H 0.36 6.85 9.06 45.56 0.41 7.27 15 LS Contribution 234.08 15.07 3.53 3.53 Total: -1.00 -28.90 234.08 -3.75 -32.65 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.50 Total: 17.05 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.39 Total: -2.00 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.80 Total: -44.15 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.23 Total: -11.40 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.07 Total: -8.02 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.90 -3.75 -32.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655450.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.412 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds