Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30759 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48500 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47244 * 300.00411 * 3 2 1 6 6 H 1.48503 * 109.46756 * 60.00347 * 3 2 1 7 7 C 1.40006 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.41389 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.40347 * 119.76575 * 180.02562 * 9 7 2 11 11 C 1.39161 * 119.00637 * 179.97438 * 10 9 7 12 12 N 1.39268 * 120.74738 * 180.02562 * 11 10 9 13 13 C 1.39453 * 118.50381 * 0.02562 * 11 10 9 14 14 C 1.50696 * 120.28821 * 180.02562 * 13 11 10 15 15 F 1.39905 * 109.47291 * 302.15096 * 14 13 11 16 16 F 1.39892 * 109.47164 * 62.15452 * 14 13 11 17 17 C 1.39217 * 119.42187 * 0.02562 * 13 11 10 18 18 O 1.35625 * 119.51133 * 180.28027 * 17 13 11 19 19 N 1.31925 * 120.97255 * 359.97438 * 17 13 11 20 20 H 0.97006 * 119.99437 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.49687 * 0.02562 * 10 9 7 22 22 H 0.97001 * 120.00272 * 353.73977 * 12 11 10 23 23 H 0.96997 * 120.00326 * 173.75131 * 12 11 10 24 24 H 1.09008 * 109.47248 * 182.15238 * 14 13 11 25 25 H 0.96703 * 114.00540 * 269.72324 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3463 -0.0006 5 1 1.8829 2.3965 -1.2124 6 1 1.8829 2.3964 1.2126 7 6 2.0076 -1.2125 -0.0005 8 1 3.0876 -1.2125 -0.0001 9 6 1.3006 -2.4370 -0.0005 10 6 2.0073 -3.6495 -0.0005 11 6 1.2956 -4.8454 0.0000 12 7 1.9599 -6.0694 0.0006 13 6 -0.0979 -4.7905 0.0000 14 6 -0.9086 -6.0608 0.0011 15 9 -0.5678 -6.8325 -1.1149 16 9 -0.6401 -6.7842 1.1680 17 6 -0.7335 -3.5519 -0.0011 18 8 -2.0886 -3.4963 0.0046 19 7 -0.0371 -2.4314 -0.0016 20 1 -0.4849 0.8401 0.0004 21 1 3.0873 -3.6545 -0.0001 22 1 2.9252 -6.0974 -0.0910 23 1 1.4574 -6.8939 0.0924 24 1 -1.9698 -5.8147 -0.0377 25 1 -2.4854 -3.4787 -0.8771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238656642.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = -118.176416 kcal Electronic energy + Delta-G solvation = -15981.325088 eV Core-core repulsion = 12823.307179 eV Total energy + Delta-G solvation = -3158.017909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.25848 -46.21912 -38.79155 -36.24077 -34.62359 -32.84484 -30.14509 -28.67920 -26.77858 -23.82517 -21.67851 -20.84364 -18.13807 -17.37467 -16.99894 -16.46377 -16.18109 -15.58583 -15.11849 -14.68215 -13.92742 -13.62080 -13.21039 -13.04251 -12.66153 -12.40845 -12.04103 -11.73712 -11.36936 -11.22884 -11.05380 -10.51700 -10.31893 -10.29998 -9.84399 -9.26313 -7.81097 -7.71599 -6.98934 -6.55408 -4.75482 2.43840 2.98026 3.02297 3.06796 3.12515 3.83451 4.45245 4.59231 4.60337 4.99394 5.26015 5.56544 5.63309 5.98146 6.51330 6.61264 6.76277 6.99312 7.15457 7.33894 7.39114 8.02228 8.20107 8.30645 8.54026 8.59328 8.84790 9.92573 10.14145 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.045265 B = 0.008134 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.436107 B = 3441.641078 C = 3883.107133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.064 3.936 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.413 4.413 8 H 0.090 0.910 9 C 0.300 3.700 10 C -0.360 4.360 11 C 0.304 3.696 12 N -0.877 5.877 13 C -0.439 4.439 14 C 0.333 3.667 15 F -0.220 7.220 16 F -0.219 7.219 17 C 0.386 3.614 18 O -0.498 6.498 19 N -0.514 5.514 20 H 0.276 0.724 21 H 0.104 0.896 22 H 0.391 0.609 23 H 0.389 0.611 24 H 0.106 0.894 25 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -4.737 -1.699 5.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.163 4.163 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.443 4.443 8 H 0.108 0.892 9 C 0.178 3.822 10 C -0.388 4.388 11 C 0.195 3.805 12 N -0.417 5.417 13 C -0.451 4.451 14 C 0.278 3.722 15 F -0.201 7.201 16 F -0.200 7.200 17 C 0.194 3.806 18 O -0.303 6.303 19 N -0.237 5.237 20 H 0.087 0.913 21 H 0.122 0.878 22 H 0.219 0.781 23 H 0.217 0.783 24 H 0.123 0.877 25 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.668 -3.751 -1.083 3.961 hybrid contribution 0.888 -0.549 -0.448 1.136 sum 0.220 -4.301 -1.531 4.571 Atomic orbital electron populations 1.70168 1.07278 1.28179 1.26247 1.26196 0.95017 1.01491 0.93592 0.86196 0.80826 0.80692 0.78746 1.18216 1.19640 1.19625 1.19797 0.94601 0.89181 1.40674 0.89196 1.18022 0.86474 0.91680 0.86041 1.21104 0.98487 0.91249 1.27947 1.17169 0.89673 0.85824 0.87871 1.42333 1.09170 1.05458 1.84780 1.19882 0.92843 0.93339 1.39058 1.19887 0.99497 0.82752 0.70019 1.92912 1.94557 1.78360 1.54310 1.92911 1.95851 1.80621 1.50665 1.18795 0.83125 0.87434 0.91254 1.84647 1.16608 1.96146 1.32917 1.68300 1.07951 1.25626 1.21855 0.91266 0.87798 0.78135 0.78251 0.87686 0.75898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.08 11.46 55.55 0.64 -17.44 15 2 C 0.06 1.58 5.50 -17.35 -0.10 1.48 15 3 Si 0.91 17.79 29.56 -169.99 -5.02 12.77 15 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 7 C -0.41 -10.67 9.14 -37.72 -0.34 -11.01 15 8 H 0.09 2.15 7.85 -52.48 -0.41 1.74 15 9 C 0.30 8.06 6.55 -85.03 -0.56 7.50 15 10 C -0.36 -8.76 9.72 -38.45 -0.37 -9.13 15 11 C 0.30 6.86 6.70 -83.69 -0.56 6.30 15 12 N -0.88 -16.05 8.83 32.49 0.29 -15.76 15 13 C -0.44 -9.94 5.44 -103.81 -0.56 -10.51 15 14 C 0.33 6.37 4.90 36.00 0.18 6.55 15 15 F -0.22 -4.11 16.29 2.25 0.04 -4.07 15 16 F -0.22 -4.28 16.41 2.25 0.04 -4.25 15 17 C 0.39 9.37 7.72 -17.15 -0.13 9.24 15 18 O -0.50 -10.33 12.32 -18.57 -0.23 -10.56 15 19 N -0.51 -14.01 7.88 -11.27 -0.09 -14.10 15 20 H 0.28 6.42 8.29 -40.82 -0.34 6.08 15 21 H 0.10 2.33 8.06 -52.48 -0.42 1.90 15 22 H 0.39 6.10 8.86 -40.82 -0.36 5.74 15 23 H 0.39 6.79 6.48 -40.82 -0.26 6.53 15 24 H 0.11 1.78 7.00 -51.92 -0.36 1.41 15 25 H 0.39 5.99 9.06 45.56 0.41 6.41 15 LS Contribution 235.32 15.07 3.55 3.55 Total: -1.00 -30.01 235.32 -3.80 -33.81 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.55 Total: 15.64 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.45 Total: 0.43 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.83 Total: -47.31 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.23 Total: -10.56 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.02 Total: 12.77 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.01 -3.80 -33.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238656642.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.370 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds