Wall clock time and date at job start Mon Mar 30 2020 02:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30806 * 1 3 3 Si 1.86804 * 120.00286 * 2 1 4 4 H 1.48504 * 109.47006 * 274.36059 * 3 2 1 5 5 H 1.48499 * 109.46928 * 34.35935 * 3 2 1 6 6 H 1.48500 * 109.46948 * 154.36146 * 3 2 1 7 7 C 1.40056 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00064 * 341.48428 * 7 2 1 9 9 C 1.40898 * 119.99856 * 161.75232 * 7 2 1 10 10 C 1.41650 * 121.10876 * 135.03793 * 9 7 2 11 11 O 1.35716 * 120.59881 * 359.97438 * 10 9 7 12 12 C 1.38239 * 118.81391 * 179.97438 * 10 9 7 13 13 N 1.32018 * 121.14127 * 0.02562 * 12 10 9 14 14 C 1.31826 * 122.52942 * 0.02562 * 13 12 10 15 15 C 1.50699 * 119.48818 * 180.02562 * 14 13 12 16 16 F 1.39901 * 109.47313 * 119.99938 * 15 14 13 17 17 F 1.39901 * 109.47185 * 239.99565 * 15 14 13 18 18 C 1.38689 * 121.02432 * 359.73112 * 14 13 12 19 19 N 1.38872 * 120.64609 * 180.29270 * 18 14 13 20 20 H 0.96998 * 119.99778 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99623 * 88.29593 * 11 10 9 22 22 H 1.07997 * 119.42889 * 179.97438 * 12 10 9 23 23 H 1.09004 * 109.47127 * 359.97438 * 15 14 13 24 24 H 0.96995 * 120.00275 * 180.22863 * 19 18 14 25 25 H 0.97003 * 119.99673 * 0.23219 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3975 2.0996 -1.3961 5 1 1.4887 2.6243 0.7902 6 1 3.5828 1.4152 0.6058 7 6 2.0083 -1.2129 0.0005 8 1 1.5103 -2.1239 0.2980 9 6 3.3642 -1.2438 -0.3815 10 6 4.3195 -1.9725 0.3686 11 8 3.9480 -2.6603 1.4780 12 6 5.6371 -1.9707 -0.0496 13 7 6.0106 -1.3050 -1.1267 14 6 5.1635 -0.6103 -1.8600 15 6 5.6645 0.1237 -3.0770 16 9 5.0058 -0.3552 -4.2145 17 9 5.4116 1.4921 -2.9333 18 6 3.8173 -0.5495 -1.5322 19 7 2.9307 0.1798 -2.3136 20 1 -0.4850 0.8400 0.0004 21 1 3.6594 -3.5661 1.3009 22 1 6.3739 -2.5226 0.5152 23 1 6.7373 -0.0380 -3.1829 24 1 1.9917 0.2187 -2.0738 25 1 3.2506 0.6503 -3.0993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238659680.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:42 Heat of formation + Delta-G solvation = -111.786071 kcal Electronic energy + Delta-G solvation = -16425.720174 eV Core-core repulsion = 13267.979371 eV Total energy + Delta-G solvation = -3157.740803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.59694 -46.54350 -39.30429 -36.30594 -34.98209 -33.02289 -30.75883 -29.06735 -25.98362 -25.08444 -21.65727 -20.95074 -18.45530 -17.55895 -17.27749 -16.79674 -16.37074 -15.79663 -15.18643 -14.80005 -14.23156 -13.93199 -13.54941 -13.11513 -12.96860 -12.95425 -12.63138 -12.09193 -11.72729 -11.38472 -11.08421 -10.69544 -10.50033 -9.99619 -9.91890 -9.15556 -8.51228 -8.02390 -7.07692 -6.87713 -4.61314 1.96927 2.43575 3.08301 3.11585 3.23146 3.86299 4.11924 4.27855 4.61947 4.67871 4.91605 5.19387 5.33718 5.60749 5.81407 6.23812 6.33519 6.51980 7.02332 7.08830 7.39619 8.00943 8.15509 8.26686 8.46706 8.59127 8.70976 8.99999 9.96980 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.015431 C = 0.010886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.813067 B = 1814.135383 C = 2571.427788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.076 3.924 3 Si 0.901 3.099 4 H -0.252 1.252 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.446 4.446 8 H 0.097 0.903 9 C 0.035 3.965 10 C 0.001 3.999 11 O -0.482 6.482 12 C 0.051 3.949 13 N -0.489 5.489 14 C -0.052 4.052 15 C 0.329 3.671 16 F -0.205 7.205 17 F -0.205 7.205 18 C 0.150 3.850 19 N -0.861 5.861 20 H 0.286 0.714 21 H 0.366 0.634 22 H 0.139 0.861 23 H 0.120 0.880 24 H 0.404 0.596 25 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 0.411 -3.887 6.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.176 1.176 5 H -0.217 1.217 6 H -0.179 1.179 7 C -0.478 4.478 8 H 0.114 0.886 9 C 0.024 3.976 10 C -0.049 4.049 11 O -0.287 6.287 12 C -0.111 4.111 13 N -0.203 5.203 14 C -0.190 4.190 15 C 0.274 3.726 16 F -0.186 7.186 17 F -0.187 7.187 18 C 0.041 3.959 19 N -0.406 5.406 20 H 0.097 0.903 21 H 0.219 0.781 22 H 0.156 0.844 23 H 0.137 0.863 24 H 0.238 0.762 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.375 1.044 -3.869 7.530 hybrid contribution -1.164 0.480 -0.134 1.266 sum 5.210 1.524 -4.003 6.745 Atomic orbital electron populations 1.69680 1.07766 1.30241 1.35607 1.26063 0.94810 1.01298 0.92034 0.86639 0.81003 0.80066 0.79687 1.17641 1.21714 1.17907 1.18852 0.92114 0.96476 1.40324 0.88566 1.18019 0.94616 0.94779 0.90224 1.19531 0.91362 1.04424 0.89586 1.84757 1.86913 1.28188 1.28876 1.22131 0.94283 1.00662 0.94011 1.66697 1.36584 1.10152 1.06851 1.20181 0.89705 1.08279 1.00818 1.19955 0.97004 0.74587 0.81052 1.92957 1.84223 1.88155 1.53276 1.92963 1.95915 1.33788 1.96005 1.18730 0.89271 0.96173 0.91712 1.42796 1.10776 1.56190 1.30834 0.90348 0.78128 0.84385 0.86282 0.76171 0.78206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.52 13.93 55.55 0.77 -19.75 15 2 C 0.08 1.91 4.15 -17.31 -0.07 1.84 15 3 Si 0.90 20.68 24.26 -169.99 -4.12 16.56 15 4 H -0.25 -5.39 6.05 56.52 0.34 -5.05 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.26 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.45 -11.55 8.89 -37.89 -0.34 -11.89 15 8 H 0.10 2.62 8.06 -52.49 -0.42 2.20 15 9 C 0.04 0.87 4.67 -106.22 -0.50 0.37 15 10 C 0.00 0.03 6.77 -38.28 -0.26 -0.23 15 11 O -0.48 -10.01 13.05 -18.85 -0.25 -10.26 15 12 C 0.05 1.08 11.11 -17.47 -0.19 0.89 15 13 N -0.49 -10.53 10.20 -9.33 -0.10 -10.62 15 14 C -0.05 -1.14 6.30 -82.43 -0.52 -1.66 15 15 C 0.33 5.95 5.03 36.01 0.18 6.13 15 16 F -0.20 -3.67 16.22 2.25 0.04 -3.63 15 17 F -0.21 -3.82 16.27 2.25 0.04 -3.78 15 18 C 0.15 3.48 5.22 -83.14 -0.43 3.04 15 19 N -0.86 -18.46 6.03 32.79 0.20 -18.26 15 20 H 0.29 6.64 8.30 -40.82 -0.34 6.30 15 21 H 0.37 5.85 9.06 45.56 0.41 6.26 15 22 H 0.14 2.47 8.06 -52.49 -0.42 2.05 15 23 H 0.12 1.81 8.10 -51.93 -0.42 1.39 15 24 H 0.40 8.90 5.15 -40.82 -0.21 8.69 15 25 H 0.39 7.58 6.25 -40.82 -0.26 7.33 15 LS Contribution 225.32 15.07 3.40 3.40 Total: -1.00 -28.14 225.32 -2.67 -30.81 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.51 Total: 17.04 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.13 Total: -1.50 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.88 Total: -48.64 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.25 Total: -10.26 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.07 Total: -7.41 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.12 Total: 16.56 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.14 -2.67 -30.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238659680.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.979 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds