Wall clock time and date at job start Mon Mar 30 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30920 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48501 * 109.47177 * 270.00335 * 3 2 1 5 5 H 1.48506 * 109.47055 * 29.99989 * 3 2 1 6 6 H 1.48497 * 109.47470 * 150.00129 * 3 2 1 7 7 C 1.39914 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00049 * 159.50859 * 7 2 1 9 9 C 1.40916 * 120.00120 * 339.50889 * 7 2 1 10 10 C 1.41857 * 120.76022 * 138.09624 * 9 7 2 11 11 N 1.38518 * 120.96921 * 359.97438 * 10 9 7 12 12 C 1.39129 * 118.06364 * 180.24963 * 10 9 7 13 13 C 1.50704 * 120.26126 * 179.77942 * 12 10 9 14 14 F 1.39900 * 109.47002 * 199.65217 * 13 12 10 15 15 F 1.39905 * 109.46629 * 319.64764 * 13 12 10 16 16 C 1.38051 * 119.47751 * 359.74947 * 12 10 9 17 17 N 1.32232 * 121.54086 * 0.02562 * 16 12 10 18 18 C 1.32007 * 122.12521 * 359.97438 * 17 16 12 19 19 O 1.35447 * 119.84497 * 179.97438 * 18 17 16 20 20 H 0.97001 * 120.00269 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99344 * 351.97236 * 11 10 9 22 22 H 0.96996 * 120.00458 * 171.98168 * 11 10 9 23 23 H 1.08997 * 109.47765 * 79.65048 * 13 12 10 24 24 H 1.07998 * 119.23268 * 179.97438 * 16 12 10 25 25 H 0.96696 * 113.99993 * 84.87971 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4407 2.6527 0.7001 6 1 3.5408 1.4402 0.7000 7 6 2.0088 -1.2117 -0.0005 8 1 3.0375 -1.2411 -0.3280 9 6 1.3711 -2.3937 0.4261 10 6 1.5568 -3.6123 -0.2759 11 7 2.3678 -3.6724 -1.3973 12 6 0.8962 -4.7440 0.1913 13 6 1.0543 -6.0634 -0.5197 14 9 -0.0038 -6.9101 -0.1722 15 9 1.0472 -5.8516 -1.9026 16 6 0.0951 -4.6491 1.3116 17 7 -0.0616 -3.5045 1.9549 18 6 0.5355 -2.3932 1.5660 19 8 0.3420 -1.2459 2.2594 20 1 -0.4850 0.8400 0.0004 21 1 2.7247 -2.8565 -1.7819 22 1 2.5786 -4.5302 -1.7980 23 1 1.9984 -6.5230 -0.2273 24 1 -0.4162 -5.5300 1.6706 25 1 0.9284 -1.1431 3.0213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238659715.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:11 Heat of formation + Delta-G solvation = -113.930980 kcal Electronic energy + Delta-G solvation = -16140.213897 eV Core-core repulsion = 12982.380084 eV Total energy + Delta-G solvation = -3157.833813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.49928 -46.53154 -38.87064 -35.84720 -34.27164 -33.11160 -30.28051 -29.13001 -25.32771 -24.96435 -21.30772 -21.03329 -17.61792 -17.39365 -17.30945 -16.88494 -16.06549 -15.67279 -15.04607 -14.78941 -14.05303 -13.37157 -13.29836 -13.17116 -12.83721 -12.46977 -12.27849 -11.65142 -11.44440 -11.18443 -10.91533 -10.70703 -10.21544 -10.16909 -10.06645 -8.99599 -8.06202 -7.53371 -7.01290 -6.67644 -4.32690 2.31369 2.81960 3.09741 3.11673 3.14652 3.97426 4.32865 4.60419 4.79011 4.90345 5.11327 5.26346 5.50191 5.58852 6.05028 6.64139 6.76026 6.99632 7.09262 7.30056 7.60627 8.05674 8.34764 8.54812 8.65486 8.85030 9.18794 9.51972 10.29678 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.039022 B = 0.009427 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.372164 B = 2969.364130 C = 3481.719183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.093 3.907 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.480 4.480 8 H 0.077 0.923 9 C 0.021 3.979 10 C 0.204 3.796 11 N -0.864 5.864 12 C -0.298 4.298 13 C 0.330 3.670 14 F -0.207 7.207 15 F -0.209 7.209 16 C 0.073 3.927 17 N -0.523 5.523 18 C 0.254 3.746 19 O -0.455 6.455 20 H 0.280 0.720 21 H 0.399 0.601 22 H 0.386 0.614 23 H 0.103 0.897 24 H 0.133 0.867 25 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -5.047 -0.817 7.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.128 4.128 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.510 4.510 8 H 0.095 0.905 9 C 0.012 3.988 10 C 0.092 3.908 11 N -0.406 5.406 12 C -0.308 4.308 13 C 0.276 3.724 14 F -0.188 7.188 15 F -0.190 7.190 16 C -0.089 4.089 17 N -0.243 5.243 18 C 0.075 3.925 19 O -0.256 6.256 20 H 0.091 0.909 21 H 0.229 0.771 22 H 0.215 0.785 23 H 0.120 0.880 24 H 0.150 0.850 25 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.931 -4.662 -0.501 6.119 hybrid contribution 1.212 0.702 -0.803 1.615 sum 5.143 -3.960 -1.304 6.620 Atomic orbital electron populations 1.69742 1.07643 1.29361 1.31992 1.25624 0.94384 1.00405 0.92424 0.86447 0.80574 0.81517 0.78808 1.19983 1.20204 1.18755 1.18780 0.98645 0.91289 1.42251 0.90513 1.18016 0.95822 0.91756 0.93175 1.17811 0.92304 0.93499 0.87173 1.42117 1.56566 1.10645 1.31251 1.20321 1.11873 0.93680 1.04900 1.20089 0.88389 0.88618 0.75349 1.92916 1.61245 1.72822 1.91834 1.92887 1.96921 1.95586 1.33610 1.21016 0.99492 0.94414 0.93933 1.66693 1.23817 0.99090 1.34710 1.19031 0.98219 0.83858 0.91361 1.84907 1.61410 1.35444 1.43819 0.90883 0.77118 0.78513 0.87950 0.84977 0.78830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.31 11.64 55.55 0.65 -19.67 15 2 C 0.09 2.29 4.40 -17.31 -0.08 2.22 15 3 Si 0.90 18.37 29.61 -169.99 -5.03 13.33 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 15 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 7 C -0.48 -11.91 7.93 -37.94 -0.30 -12.21 15 8 H 0.08 1.79 7.57 -52.49 -0.40 1.40 15 9 C 0.02 0.52 5.33 -106.32 -0.57 -0.05 15 10 C 0.20 4.60 6.72 -83.13 -0.56 4.04 15 11 N -0.86 -16.21 8.55 32.82 0.28 -15.93 15 12 C -0.30 -6.32 5.74 -104.36 -0.60 -6.92 15 13 C 0.33 5.64 5.26 36.01 0.19 5.83 15 14 F -0.21 -3.63 16.21 2.25 0.04 -3.59 15 15 F -0.21 -3.68 14.88 2.25 0.03 -3.65 15 16 C 0.07 1.63 10.55 -17.45 -0.18 1.45 15 17 N -0.52 -13.17 10.36 -12.75 -0.13 -13.31 15 18 C 0.25 6.58 7.28 -16.30 -0.12 6.46 15 19 O -0.45 -11.26 10.83 -18.03 -0.20 -11.46 15 20 H 0.28 6.94 8.30 -40.82 -0.34 6.60 15 21 H 0.40 7.34 7.64 -40.82 -0.31 7.03 15 22 H 0.39 6.20 6.41 -40.82 -0.26 5.94 15 23 H 0.10 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.13 2.65 7.33 -52.49 -0.38 2.27 15 25 H 0.36 7.15 9.06 45.56 0.41 7.56 15 LS Contribution 231.06 15.07 3.48 3.48 Total: -1.00 -29.88 231.06 -3.60 -33.47 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.50 Total: 16.49 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.22 Total: 0.82 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.80 Total: -48.91 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.20 Total: -11.46 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 0.07 Total: -7.24 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.88 -3.60 -33.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238659715.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.457 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds