Wall clock time and date at job start Mon Mar 30 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30920 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48501 * 109.47177 * 270.00335 * 3 2 1 5 5 H 1.48506 * 109.47055 * 29.99989 * 3 2 1 6 6 H 1.48497 * 109.47470 * 150.00129 * 3 2 1 7 7 C 1.39914 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00049 * 159.50859 * 7 2 1 9 9 C 1.40916 * 120.00120 * 339.50889 * 7 2 1 10 10 C 1.41857 * 120.76022 * 138.09624 * 9 7 2 11 11 N 1.38518 * 120.96921 * 359.97438 * 10 9 7 12 12 C 1.39129 * 118.06364 * 180.24963 * 10 9 7 13 13 C 1.50704 * 120.26126 * 179.77942 * 12 10 9 14 14 F 1.39900 * 109.47002 * 199.65217 * 13 12 10 15 15 F 1.39905 * 109.46629 * 319.64764 * 13 12 10 16 16 C 1.38051 * 119.47751 * 359.74947 * 12 10 9 17 17 N 1.32232 * 121.54086 * 0.02562 * 16 12 10 18 18 C 1.32007 * 122.12521 * 359.97438 * 17 16 12 19 19 O 1.35447 * 119.84497 * 179.97438 * 18 17 16 20 20 H 0.97001 * 120.00269 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99344 * 351.97236 * 11 10 9 22 22 H 0.96996 * 120.00458 * 171.98168 * 11 10 9 23 23 H 1.08997 * 109.47765 * 79.65048 * 13 12 10 24 24 H 1.07998 * 119.23268 * 179.97438 * 16 12 10 25 25 H 0.96696 * 113.99993 * 84.87971 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4407 2.6527 0.7001 6 1 3.5408 1.4402 0.7000 7 6 2.0088 -1.2117 -0.0005 8 1 3.0375 -1.2411 -0.3280 9 6 1.3711 -2.3937 0.4261 10 6 1.5568 -3.6123 -0.2759 11 7 2.3678 -3.6724 -1.3973 12 6 0.8962 -4.7440 0.1913 13 6 1.0543 -6.0634 -0.5197 14 9 -0.0038 -6.9101 -0.1722 15 9 1.0472 -5.8516 -1.9026 16 6 0.0951 -4.6491 1.3116 17 7 -0.0616 -3.5045 1.9549 18 6 0.5355 -2.3932 1.5660 19 8 0.3420 -1.2459 2.2594 20 1 -0.4850 0.8400 0.0004 21 1 2.7247 -2.8565 -1.7819 22 1 2.5786 -4.5302 -1.7980 23 1 1.9984 -6.5230 -0.2273 24 1 -0.4162 -5.5300 1.6706 25 1 0.9284 -1.1431 3.0213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238659715.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:11 Heat of formation + Delta-G solvation = -138.256390 kcal Electronic energy + Delta-G solvation = -16141.268726 eV Core-core repulsion = 12982.380084 eV Total energy + Delta-G solvation = -3158.888642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.87173 -47.90452 -40.65644 -37.65623 -36.04299 -34.90522 -31.98580 -30.87395 -27.15499 -26.51107 -23.07991 -22.76245 -19.37772 -19.18528 -18.85090 -18.26183 -17.63967 -17.20989 -16.80846 -16.49392 -15.75828 -15.16803 -14.84685 -14.68366 -14.25472 -14.11767 -13.86057 -13.37689 -13.07229 -12.89223 -12.60626 -12.28603 -11.97925 -11.93103 -11.70515 -10.80562 -9.89268 -9.31912 -8.75968 -8.46873 -6.20440 0.54078 1.04141 1.44552 1.49612 1.57516 2.28018 2.80968 3.01106 3.19739 3.35371 3.40419 3.79710 3.85486 4.17295 4.34621 4.94587 5.02029 5.24927 5.29192 5.48647 5.87559 6.25392 6.57710 6.83978 6.94485 7.22731 7.41096 7.69263 8.49941 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.039022 B = 0.009427 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.372164 B = 2969.364130 C = 3481.719183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.055 3.945 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.085 0.915 9 C -0.013 4.013 10 C 0.204 3.796 11 N -0.847 5.847 12 C -0.306 4.306 13 C 0.335 3.665 14 F -0.208 7.208 15 F -0.211 7.211 16 C 0.072 3.928 17 N -0.552 5.552 18 C 0.229 3.771 19 O -0.470 6.470 20 H 0.280 0.720 21 H 0.402 0.598 22 H 0.401 0.599 23 H 0.154 0.846 24 H 0.155 0.845 25 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -5.907 -1.483 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.162 4.162 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.528 4.528 8 H 0.103 0.897 9 C -0.021 4.021 10 C 0.090 3.910 11 N -0.390 5.390 12 C -0.316 4.316 13 C 0.281 3.719 14 F -0.190 7.190 15 F -0.193 7.193 16 C -0.089 4.089 17 N -0.273 5.273 18 C 0.052 3.948 19 O -0.273 6.273 20 H 0.090 0.910 21 H 0.232 0.768 22 H 0.233 0.767 23 H 0.171 0.829 24 H 0.173 0.827 25 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.239 -5.540 -1.185 7.717 hybrid contribution 0.795 0.810 -0.593 1.281 sum 6.034 -4.730 -1.778 7.871 Atomic orbital electron populations 1.69842 1.09440 1.30066 1.34452 1.26422 0.94814 1.03625 0.91365 0.85344 0.79127 0.76971 0.78922 1.19240 1.20620 1.17994 1.19004 0.98992 0.91789 1.42986 0.89704 1.18338 0.96780 0.93234 0.93732 1.17984 0.92201 0.93117 0.87683 1.42052 1.55239 1.11760 1.29924 1.20672 1.10752 0.95515 1.04694 1.20315 0.90183 0.86727 0.74651 1.92917 1.61759 1.72480 1.91814 1.92883 1.96993 1.95572 1.33821 1.21543 0.98996 0.94346 0.94018 1.66700 1.24910 0.99770 1.35886 1.19291 0.99173 0.84149 0.92156 1.84841 1.62191 1.35648 1.44621 0.90976 0.76774 0.76677 0.82915 0.82737 0.77172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.03 11.64 21.83 0.25 -43.78 15 2 C 0.05 2.70 4.40 85.23 0.38 3.07 15 3 Si 0.97 37.71 29.61 68.60 2.03 39.74 15 4 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 5 H -0.28 -10.93 7.11 99.48 0.71 -10.23 15 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 7 C -0.50 -24.65 7.93 23.33 0.18 -24.47 15 8 H 0.09 3.91 7.57 -2.91 -0.02 3.88 15 9 C -0.01 -0.64 5.33 -20.97 -0.11 -0.75 15 10 C 0.20 8.93 6.72 39.20 0.26 9.19 15 11 N -0.85 -29.94 8.55 -50.09 -0.43 -30.37 15 12 C -0.31 -12.35 5.74 -19.69 -0.11 -12.46 15 13 C 0.34 10.24 5.26 71.24 0.37 10.62 15 14 F -0.21 -6.63 16.21 44.97 0.73 -5.90 15 15 F -0.21 -6.74 14.88 44.97 0.67 -6.07 15 16 C 0.07 3.16 10.55 84.59 0.89 4.05 15 17 N -0.55 -27.86 10.36 -307.37 -3.18 -31.04 15 18 C 0.23 12.04 7.28 85.43 0.62 12.66 15 19 O -0.47 -23.86 10.83 -87.44 -0.95 -24.81 15 20 H 0.28 14.21 8.30 -92.71 -0.77 13.44 15 21 H 0.40 14.06 7.64 -92.70 -0.71 13.35 15 22 H 0.40 11.65 6.41 -92.71 -0.59 11.05 15 23 H 0.15 3.29 8.14 -2.39 -0.02 3.27 15 24 H 0.16 5.90 7.33 -2.91 -0.02 5.88 15 25 H 0.37 15.36 9.06 -74.06 -0.67 14.69 15 Total: -1.00 -63.93 231.06 0.93 -63.00 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.68 Total: 37.32 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 2.49 Total: 1.92 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.36 Total: -105.19 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.95 Total: -24.81 kcal Atomic # 9 Polarization: -13.37 SS G_CDS: 1.40 Total: -11.98 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -63.93 0.93 -63.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238659715.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.256 kcal (2) G-P(sol) polarization free energy of solvation -63.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds