Wall clock time and date at job start Mon Mar 30 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30796 * 1 3 3 Si 1.86791 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47509 * 239.99831 * 3 2 1 5 5 H 1.48505 * 109.47520 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47175 * 120.00059 * 3 2 1 7 7 C 1.40033 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.40789 * 120.00186 * 0.02562 * 7 2 1 10 10 N 1.33833 * 119.88213 * 359.96865 * 9 7 2 11 11 C 1.31692 * 121.51408 * 180.02562 * 10 9 7 12 12 O 1.35663 * 119.43815 * 180.02562 * 11 10 9 13 13 C 1.39767 * 121.12167 * 0.02562 * 11 10 9 14 14 C 1.38249 * 119.64327 * 0.02598 * 13 11 10 15 15 C 1.50701 * 120.70245 * 180.25074 * 14 13 11 16 16 F 1.39905 * 109.47241 * 119.72077 * 15 14 13 17 17 F 1.39903 * 109.47180 * 239.71628 * 15 14 13 18 18 C 1.39415 * 118.58877 * 359.97293 * 14 13 11 19 19 N 1.38626 * 120.55029 * 179.97438 * 18 14 13 20 20 H 0.96998 * 119.99620 * 359.97438 * 1 2 3 21 21 H 0.96707 * 114.00019 * 90.00285 * 12 11 10 22 22 H 1.08002 * 120.17393 * 180.02562 * 13 11 10 23 23 H 1.09001 * 109.47611 * 359.71704 * 15 14 13 24 24 H 0.96996 * 120.00293 * 359.97438 * 19 18 14 25 25 H 0.96998 * 119.99788 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6964 -1.2124 5 1 1.2770 2.7465 0.0006 6 1 3.0957 1.6963 1.2125 7 6 2.0080 -1.2128 0.0005 8 1 3.0881 -1.2128 0.0010 9 6 1.3040 -2.4320 0.0005 10 7 -0.0343 -2.4292 0.0007 11 6 -0.7250 -3.5504 0.0012 12 8 -2.0806 -3.4985 0.0007 13 6 -0.0852 -4.7931 0.0021 14 6 1.2961 -4.8509 0.0031 15 6 2.0106 -6.1778 -0.0015 16 9 2.8085 -6.2738 -1.1467 17 9 2.8164 -6.2775 1.1379 18 6 2.0139 -3.6558 0.0025 19 7 3.4001 -3.6664 0.0040 20 1 -0.4849 0.8401 0.0004 21 1 -2.4734 -3.4840 -0.8829 22 1 -0.6668 -5.7031 0.0021 23 1 1.2782 -6.9850 -0.0002 24 1 3.8787 -4.5100 0.0059 25 1 3.8915 -2.8300 0.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238660925.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:38 Heat of formation + Delta-G solvation = -110.747401 kcal Electronic energy + Delta-G solvation = -15996.148272 eV Core-core repulsion = 12838.452509 eV Total energy + Delta-G solvation = -3157.695763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.47430 -46.43036 -38.76352 -36.24176 -33.85610 -33.07528 -31.24736 -27.95248 -25.84033 -25.10236 -21.43756 -20.92030 -18.02190 -17.54399 -16.87119 -16.66286 -15.99389 -15.53744 -15.01975 -14.90621 -14.02869 -13.74348 -13.40166 -13.02909 -12.84900 -12.22146 -12.16937 -11.74013 -11.42117 -11.25778 -10.82204 -10.64411 -10.32209 -10.05600 -9.83192 -9.37340 -8.24733 -7.73925 -6.72054 -6.47455 -4.45082 2.52521 2.71744 3.04302 3.05276 3.08550 3.87467 4.33795 4.54006 4.80649 4.92506 5.25522 5.27985 5.53492 5.82177 6.20389 6.51044 6.74011 7.00272 7.07244 7.23135 7.49196 7.96367 8.18107 8.54429 8.59393 8.74207 8.96276 9.96951 10.22977 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028732 B = 0.010006 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.278255 B = 2797.629635 C = 3594.895152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.425 4.425 8 H 0.084 0.916 9 C 0.243 3.757 10 N -0.479 5.479 11 C 0.279 3.721 12 O -0.495 6.495 13 C -0.265 4.265 14 C -0.201 4.201 15 C 0.322 3.678 16 F -0.210 7.210 17 F -0.210 7.210 18 C 0.122 3.878 19 N -0.867 5.867 20 H 0.275 0.725 21 H 0.376 0.624 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.383 0.617 25 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -4.847 -1.610 5.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.160 4.160 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.458 4.458 8 H 0.102 0.898 9 C 0.111 3.889 10 N -0.202 5.202 11 C 0.098 3.902 12 O -0.299 6.299 13 C -0.291 4.291 14 C -0.213 4.213 15 C 0.268 3.732 16 F -0.192 7.192 17 F -0.191 7.191 18 C 0.013 3.987 19 N -0.409 5.409 20 H 0.086 0.914 21 H 0.230 0.770 22 H 0.121 0.879 23 H 0.124 0.876 24 H 0.210 0.790 25 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.193 -3.956 -0.989 4.630 hybrid contribution 1.087 -0.164 -0.474 1.197 sum 3.280 -4.120 -1.464 5.466 Atomic orbital electron populations 1.70154 1.07086 1.28061 1.27488 1.26006 0.94958 1.00965 0.94063 0.86354 0.80044 0.80428 0.79840 1.18929 1.20122 1.18924 1.19229 0.93954 0.89343 1.43270 0.89757 1.18054 0.87018 0.90099 0.93711 1.68167 1.06432 1.26573 1.19023 1.19128 0.83328 0.88368 0.99416 1.84719 1.16650 1.96303 1.32271 1.20642 0.92212 0.97213 1.18993 1.19255 0.94026 0.91071 1.16942 1.20227 0.84165 0.98307 0.70490 1.92948 1.77040 1.97441 1.51728 1.92949 1.76615 1.97412 1.52171 1.18724 0.84390 0.93982 1.01579 1.41973 1.03364 1.09764 1.85809 0.91357 0.77043 0.87867 0.87627 0.78991 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.57 11.45 55.55 0.64 -17.93 15 2 C 0.07 1.63 5.50 -17.32 -0.10 1.54 15 3 Si 0.91 17.94 29.56 -169.99 -5.02 12.92 15 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 7 C -0.43 -10.77 8.88 -37.95 -0.34 -11.10 15 8 H 0.08 1.91 6.09 -52.49 -0.32 1.59 15 9 C 0.24 6.44 6.56 -84.80 -0.56 5.88 15 10 N -0.48 -13.19 7.87 -11.03 -0.09 -13.28 15 11 C 0.28 6.93 7.74 -17.04 -0.13 6.80 15 12 O -0.49 -10.98 13.56 -18.69 -0.25 -11.24 15 13 C -0.27 -5.93 9.69 -39.01 -0.38 -6.31 15 14 C -0.20 -4.42 5.41 -104.18 -0.56 -4.99 15 15 C 0.32 5.79 4.95 36.01 0.18 5.96 15 16 F -0.21 -3.81 16.39 2.25 0.04 -3.77 15 17 F -0.21 -3.86 16.35 2.25 0.04 -3.82 15 18 C 0.12 2.87 6.72 -83.12 -0.56 2.31 15 19 N -0.87 -17.28 8.78 32.81 0.29 -16.99 15 20 H 0.28 6.59 8.29 -40.82 -0.34 6.25 15 21 H 0.38 6.40 9.06 45.56 0.41 6.81 15 22 H 0.10 2.00 7.99 -52.49 -0.42 1.58 15 23 H 0.11 1.55 7.93 -51.93 -0.41 1.14 15 24 H 0.38 6.98 6.44 -40.82 -0.26 6.72 15 25 H 0.40 7.36 6.82 -40.82 -0.28 7.08 15 LS Contribution 233.36 15.07 3.52 3.52 Total: -1.00 -30.06 233.36 -3.71 -33.77 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.41 Total: 16.74 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.44 Total: 0.09 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.84 Total: -48.20 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.25 Total: -11.24 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.07 Total: -7.60 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.92 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.06 -3.71 -33.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238660925.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.979 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds