Wall clock time and date at job start Mon Mar 30 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30796 * 1 3 3 Si 1.86791 * 120.00062 * 2 1 4 4 H 1.48497 * 109.47509 * 239.99831 * 3 2 1 5 5 H 1.48505 * 109.47520 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47175 * 120.00059 * 3 2 1 7 7 C 1.40033 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.40789 * 120.00186 * 0.02562 * 7 2 1 10 10 N 1.33833 * 119.88213 * 359.96865 * 9 7 2 11 11 C 1.31692 * 121.51408 * 180.02562 * 10 9 7 12 12 O 1.35663 * 119.43815 * 180.02562 * 11 10 9 13 13 C 1.39767 * 121.12167 * 0.02562 * 11 10 9 14 14 C 1.38249 * 119.64327 * 0.02598 * 13 11 10 15 15 C 1.50701 * 120.70245 * 180.25074 * 14 13 11 16 16 F 1.39905 * 109.47241 * 119.72077 * 15 14 13 17 17 F 1.39903 * 109.47180 * 239.71628 * 15 14 13 18 18 C 1.39415 * 118.58877 * 359.97293 * 14 13 11 19 19 N 1.38626 * 120.55029 * 179.97438 * 18 14 13 20 20 H 0.96998 * 119.99620 * 359.97438 * 1 2 3 21 21 H 0.96707 * 114.00019 * 90.00285 * 12 11 10 22 22 H 1.08002 * 120.17393 * 180.02562 * 13 11 10 23 23 H 1.09001 * 109.47611 * 359.71704 * 15 14 13 24 24 H 0.96996 * 120.00293 * 359.97438 * 19 18 14 25 25 H 0.96998 * 119.99788 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6964 -1.2124 5 1 1.2770 2.7465 0.0006 6 1 3.0957 1.6963 1.2125 7 6 2.0080 -1.2128 0.0005 8 1 3.0881 -1.2128 0.0010 9 6 1.3040 -2.4320 0.0005 10 7 -0.0343 -2.4292 0.0007 11 6 -0.7250 -3.5504 0.0012 12 8 -2.0806 -3.4985 0.0007 13 6 -0.0852 -4.7931 0.0021 14 6 1.2961 -4.8509 0.0031 15 6 2.0106 -6.1778 -0.0015 16 9 2.8085 -6.2738 -1.1467 17 9 2.8164 -6.2775 1.1379 18 6 2.0139 -3.6558 0.0025 19 7 3.4001 -3.6664 0.0040 20 1 -0.4849 0.8401 0.0004 21 1 -2.4734 -3.4840 -0.8829 22 1 -0.6668 -5.7031 0.0021 23 1 1.2782 -6.9850 -0.0002 24 1 3.8787 -4.5100 0.0059 25 1 3.8915 -2.8300 0.0040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238660925.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:37 Heat of formation + Delta-G solvation = -134.812918 kcal Electronic energy + Delta-G solvation = -15997.191831 eV Core-core repulsion = 12838.452509 eV Total energy + Delta-G solvation = -3158.739322 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.90218 -47.85677 -40.56023 -37.98354 -35.64151 -34.82585 -33.01279 -29.75416 -27.55179 -26.78207 -23.20643 -22.67223 -19.73065 -19.24041 -18.51579 -18.09279 -17.67746 -17.10640 -16.69441 -16.62465 -15.76042 -15.48170 -14.84618 -14.71203 -14.27338 -13.98507 -13.72295 -13.40156 -13.09076 -12.84266 -12.54874 -12.15174 -12.04772 -11.73509 -11.57722 -11.13835 -10.06283 -9.58530 -8.50551 -8.28108 -6.31247 0.74578 0.91619 1.43085 1.53438 1.55066 2.23124 2.74478 2.91849 3.26422 3.31458 3.59058 3.78055 3.86220 4.26782 4.51703 4.72974 5.01685 5.22999 5.27810 5.45369 5.80601 6.14165 6.42102 6.75801 6.87663 7.16794 7.22992 8.12585 8.45543 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028732 B = 0.010006 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.278255 B = 2797.629635 C = 3594.895152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.020 3.980 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.208 3.792 10 N -0.517 5.517 11 C 0.247 3.753 12 O -0.502 6.502 13 C -0.251 4.251 14 C -0.212 4.212 15 C 0.328 3.672 16 F -0.210 7.210 17 F -0.212 7.212 18 C 0.109 3.891 19 N -0.854 5.854 20 H 0.277 0.723 21 H 0.396 0.604 22 H 0.138 0.862 23 H 0.151 0.849 24 H 0.392 0.608 25 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 -5.714 -1.715 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.201 4.201 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.488 4.488 8 H 0.119 0.881 9 C 0.075 3.925 10 N -0.241 5.241 11 C 0.067 3.933 12 O -0.309 6.309 13 C -0.276 4.276 14 C -0.225 4.225 15 C 0.274 3.726 16 F -0.192 7.192 17 F -0.193 7.193 18 C 0.000 4.000 19 N -0.397 5.397 20 H 0.088 0.912 21 H 0.252 0.748 22 H 0.155 0.845 23 H 0.168 0.832 24 H 0.222 0.778 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.175 -4.860 -1.107 5.910 hybrid contribution 0.739 -0.030 -0.454 0.868 sum 3.914 -4.890 -1.561 6.455 Atomic orbital electron populations 1.70289 1.08972 1.29062 1.29332 1.26976 0.95673 1.04568 0.92932 0.85165 0.78476 0.75360 0.80137 1.17974 1.19900 1.18250 1.19670 0.94929 0.89883 1.44343 0.88138 1.18502 0.87302 0.91782 0.94880 1.68083 1.07454 1.28443 1.20109 1.19502 0.84105 0.88964 1.00741 1.84657 1.15778 1.96296 1.34154 1.20989 0.92776 0.97554 1.16255 1.19765 0.94306 0.92716 1.15673 1.20378 0.84606 0.97315 0.70254 1.92950 1.77117 1.97319 1.51786 1.92948 1.76736 1.97294 1.52338 1.18849 0.85757 0.93923 1.01510 1.41862 1.02185 1.10626 1.85073 0.91205 0.74838 0.84470 0.83173 0.77847 0.76827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.78 11.45 21.84 0.25 -40.53 15 2 C 0.02 1.00 5.50 85.28 0.47 1.47 15 3 Si 0.99 36.94 29.56 68.60 2.03 38.97 15 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 15 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 7 C -0.46 -23.34 8.88 23.33 0.21 -23.14 15 8 H 0.10 4.56 6.09 -2.91 -0.02 4.54 15 9 C 0.21 11.16 6.56 40.26 0.26 11.43 15 10 N -0.52 -29.09 7.87 -301.96 -2.38 -31.47 15 11 C 0.25 12.28 7.74 85.08 0.66 12.94 15 12 O -0.50 -22.20 13.56 -89.79 -1.22 -23.42 15 13 C -0.25 -10.76 9.69 22.64 0.22 -10.54 15 14 C -0.21 -8.92 5.41 -19.58 -0.11 -9.03 15 15 C 0.33 10.66 4.95 71.24 0.35 11.01 15 16 F -0.21 -6.98 16.39 44.97 0.74 -6.24 15 17 F -0.21 -7.14 16.35 44.97 0.74 -6.40 15 18 C 0.11 5.06 6.72 39.15 0.26 5.32 15 19 N -0.85 -33.00 8.78 -50.09 -0.44 -33.44 15 20 H 0.28 13.72 8.29 -92.71 -0.77 12.95 15 21 H 0.40 13.36 9.06 -74.05 -0.67 12.69 15 22 H 0.14 4.82 7.99 -2.91 -0.02 4.80 15 23 H 0.15 3.65 7.93 -2.39 -0.02 3.64 15 24 H 0.39 13.56 6.44 -92.71 -0.60 12.96 15 25 H 0.40 14.54 6.82 -92.71 -0.63 13.91 15 Total: -1.00 -65.26 233.36 1.44 -63.82 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.61 Total: 39.23 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 2.33 Total: -0.52 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -2.57 Total: -105.44 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -1.22 Total: -23.42 kcal Atomic # 9 Polarization: -14.12 SS G_CDS: 1.47 Total: -12.64 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -65.26 1.44 -63.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238660925.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.992 kcal (2) G-P(sol) polarization free energy of solvation -65.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds