Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30944 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48494 * 109.46972 * 270.00262 * 3 2 1 5 5 H 1.48504 * 109.46825 * 29.99740 * 3 2 1 6 6 H 1.48494 * 109.47058 * 149.99854 * 3 2 1 7 7 C 1.39871 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00450 * 163.76732 * 7 2 1 9 9 C 1.40941 * 119.99718 * 343.77101 * 7 2 1 10 10 C 1.41124 * 120.63379 * 334.47156 * 9 7 2 11 11 C 1.36716 * 118.45809 * 179.97438 * 10 9 7 12 12 C 1.50700 * 120.14643 * 180.02562 * 11 10 9 13 13 F 1.39900 * 109.47355 * 209.98031 * 12 11 10 14 14 F 1.39900 * 109.46886 * 329.97940 * 12 11 10 15 15 C 1.39491 * 119.70595 * 359.97438 * 11 10 9 16 16 O 1.35488 * 119.34365 * 179.97438 * 15 11 10 17 17 N 1.32439 * 121.31192 * 0.25791 * 15 11 10 18 18 C 1.32270 * 121.65387 * 359.47655 * 17 15 11 19 19 N 1.38086 * 119.92965 * 180.27032 * 18 17 15 20 20 H 0.96993 * 119.99760 * 355.12035 * 1 2 3 21 21 H 1.08000 * 120.77126 * 359.95911 * 10 9 7 22 22 H 1.08997 * 109.47393 * 89.97682 * 12 11 10 23 23 H 0.96701 * 114.00153 * 89.99913 * 16 15 11 24 24 H 0.97002 * 119.99820 * 185.66178 * 19 18 17 25 25 H 0.96997 * 120.00633 * 5.65212 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.4909 2.0464 -1.4000 5 1 1.4409 2.6527 0.7000 6 1 3.5410 1.4401 0.7000 7 6 2.0088 -1.2113 0.0005 8 1 3.0564 -1.2301 -0.2609 9 6 1.3462 -2.4074 0.3422 10 6 0.2048 -2.3854 1.1718 11 6 -0.4035 -3.5718 1.4746 12 6 -1.6252 -3.5925 2.3566 13 9 -1.6684 -4.7979 3.0653 14 9 -1.5680 -2.5237 3.2575 15 6 0.1111 -4.7629 0.9625 16 8 -0.4972 -5.9345 1.2676 17 7 1.1858 -4.7719 0.1885 18 6 1.8126 -3.6550 -0.1420 19 7 2.9269 -3.7053 -0.9560 20 1 -0.4849 0.8370 0.0715 21 1 -0.1792 -1.4531 1.5588 22 1 -2.5197 -3.5009 1.7406 23 1 -1.1903 -6.1918 0.6444 24 1 3.4354 -2.8983 -1.1323 25 1 3.2012 -4.5475 -1.3513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238664623.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = -116.967369 kcal Electronic energy + Delta-G solvation = -16038.412203 eV Core-core repulsion = 12880.446722 eV Total energy + Delta-G solvation = -3157.965481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.14333 -46.15842 -38.99538 -36.34323 -33.98458 -33.21712 -30.89738 -29.20637 -25.48113 -24.36421 -21.94805 -20.68075 -17.88249 -17.56112 -16.91029 -16.66167 -15.79646 -15.67210 -15.48767 -14.76610 -14.03400 -13.55438 -13.05998 -12.93593 -12.55485 -12.36901 -12.12518 -11.74736 -11.61543 -11.30984 -10.90131 -10.71576 -10.49011 -9.95017 -9.46679 -9.38991 -8.40042 -8.13964 -7.08769 -6.78050 -4.39512 2.33475 2.75367 2.99597 3.00470 3.06731 3.81509 4.34343 4.53029 4.65303 5.03945 5.31162 5.39206 5.57882 5.76820 6.36763 6.55326 6.84717 6.91656 7.24505 7.40299 7.67038 8.03836 8.34567 8.46613 8.50089 8.60767 8.80521 9.49913 10.02736 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.027942 B = 0.010590 C = 0.007958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.836544 B = 2643.361719 C = 3517.527481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.446 4.446 8 H 0.080 0.920 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.242 4.242 12 C 0.327 3.673 13 F -0.201 7.201 14 F -0.209 7.209 15 C 0.232 3.768 16 O -0.478 6.478 17 N -0.547 5.547 18 C 0.336 3.664 19 N -0.855 5.855 20 H 0.284 0.716 21 H 0.139 0.861 22 H 0.102 0.898 23 H 0.366 0.634 24 H 0.404 0.596 25 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -0.751 -0.710 1.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.098 0.902 9 C 0.016 3.984 10 C -0.113 4.113 11 C -0.249 4.249 12 C 0.273 3.727 13 F -0.182 7.182 14 F -0.190 7.190 15 C 0.056 3.944 16 O -0.282 6.282 17 N -0.273 5.273 18 C 0.096 3.904 19 N -0.402 5.402 20 H 0.095 0.905 21 H 0.157 0.843 22 H 0.119 0.881 23 H 0.219 0.781 24 H 0.234 0.766 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.835 -1.402 -0.466 1.697 hybrid contribution -0.035 1.476 -0.235 1.495 sum -0.871 0.074 -0.701 1.120 Atomic orbital electron populations 1.69786 1.07508 1.29964 1.34650 1.25845 0.94817 1.01343 0.92404 0.86269 0.80587 0.80470 0.79217 1.19457 1.19951 1.18457 1.19139 0.96967 0.90813 1.40782 0.90236 1.17909 0.94689 0.91639 0.94177 1.20821 0.97503 0.95887 0.97065 1.20571 1.01116 0.95445 1.07747 1.20033 0.98844 0.70696 0.83176 1.92973 1.97750 1.46450 1.81030 1.92932 1.97826 1.57260 1.71022 1.17705 0.92706 0.83390 1.00590 1.84885 1.53472 1.38612 1.51187 1.66030 1.11363 1.30817 1.19122 1.18297 0.90616 0.88318 0.93203 1.41611 1.30505 1.12608 1.55487 0.90477 0.84312 0.88059 0.78099 0.76581 0.78722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.15 10.96 55.55 0.61 -18.54 15 2 C 0.07 1.72 5.18 -17.32 -0.09 1.63 15 3 Si 0.91 17.42 29.59 -169.99 -5.03 12.39 15 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 7 C -0.45 -10.75 8.54 -37.95 -0.32 -11.08 15 8 H 0.08 1.77 6.64 -52.49 -0.35 1.42 15 9 C 0.02 0.59 5.59 -106.45 -0.60 -0.01 15 10 C -0.09 -2.18 8.06 -39.04 -0.31 -2.49 15 11 C -0.24 -5.64 5.73 -104.71 -0.60 -6.24 15 12 C 0.33 6.54 5.57 36.01 0.20 6.74 15 13 F -0.20 -4.09 15.32 2.25 0.03 -4.06 15 14 F -0.21 -4.40 16.50 2.25 0.04 -4.36 15 15 C 0.23 5.48 7.64 -16.82 -0.13 5.35 15 16 O -0.48 -9.94 11.45 -18.16 -0.21 -10.14 15 17 N -0.55 -13.30 10.41 -11.92 -0.12 -13.43 15 18 C 0.34 7.99 7.79 -155.02 -1.21 6.78 15 19 N -0.86 -16.53 8.96 31.45 0.28 -16.25 15 20 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 21 H 0.14 3.57 5.85 -52.49 -0.31 3.26 15 22 H 0.10 1.68 8.14 -51.93 -0.42 1.25 15 23 H 0.37 5.77 9.06 45.56 0.41 6.18 15 24 H 0.40 7.15 7.03 -40.82 -0.29 6.86 15 25 H 0.39 6.56 8.95 -40.82 -0.37 6.19 15 LS Contribution 232.58 15.07 3.50 3.50 Total: -1.00 -28.75 232.58 -4.41 -33.15 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.45 Total: 17.05 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.06 Total: 0.68 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.77 Total: -48.21 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.21 Total: -10.14 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.75 -4.41 -33.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238664623.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.815 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds