Wall clock time and date at job start Mon Mar 30 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30943 * 1 3 3 Si 1.86803 * 119.99760 * 2 1 4 4 H 1.48497 * 109.47112 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47090 * 120.00557 * 3 2 1 6 6 H 1.48504 * 109.46799 * 240.00110 * 3 2 1 7 7 C 1.39868 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00477 * 155.35613 * 7 2 1 9 9 C 1.40939 * 119.99429 * 335.35393 * 7 2 1 10 10 C 1.41748 * 120.64092 * 315.05866 * 9 7 2 11 11 N 1.38094 * 119.93253 * 359.97438 * 10 9 7 12 12 N 1.32255 * 120.13951 * 179.70405 * 10 9 7 13 13 C 1.32469 * 121.64886 * 0.58603 * 12 10 9 14 14 O 1.35489 * 119.34172 * 179.71776 * 13 12 10 15 15 C 1.39451 * 121.31598 * 359.69561 * 13 12 10 16 16 C 1.36755 * 119.70651 * 0.02562 * 15 13 12 17 17 C 1.50691 * 120.76920 * 179.97438 * 16 15 13 18 18 F 1.39911 * 109.47248 * 22.47345 * 17 16 15 19 19 F 1.39900 * 109.47250 * 142.47048 * 17 16 15 20 20 H 0.97001 * 119.99607 * 173.94285 * 1 2 3 21 21 H 0.96999 * 119.99732 * 350.32058 * 11 10 9 22 22 H 0.97001 * 120.00480 * 170.30899 * 11 10 9 23 23 H 0.96697 * 114.00045 * 269.97476 * 14 13 12 24 24 H 1.08000 * 120.15096 * 179.97438 * 15 13 12 25 25 H 1.08998 * 109.47736 * 262.47344 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 1.2783 2.7465 0.0006 5 1 3.0972 1.6964 1.2125 6 1 3.0971 1.6964 -1.2126 7 6 2.0088 -1.2113 -0.0005 8 1 3.0150 -1.2537 -0.3905 9 6 1.4004 -2.3764 0.5080 10 6 0.6861 -2.3431 1.7319 11 7 0.5826 -1.1605 2.4373 12 7 0.1140 -3.4411 2.1969 13 6 0.1969 -4.5949 1.5515 14 8 -0.4023 -5.6923 2.0735 15 6 0.8883 -4.7026 0.3452 16 6 1.4960 -3.5998 -0.1884 17 6 2.2498 -3.6891 -1.4902 18 9 1.7934 -4.7930 -2.2186 19 9 2.0395 -2.5217 -2.2319 20 1 -0.4849 -0.8354 -0.0886 21 1 1.1105 -0.3907 2.1736 22 1 -0.0182 -1.0995 3.1964 23 1 0.1638 -6.2050 2.6665 24 1 0.9443 -5.6529 -0.1650 25 1 3.3145 -3.8033 -1.2865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238666285.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:40 Heat of formation + Delta-G solvation = -139.081147 kcal Electronic energy + Delta-G solvation = -16299.337292 eV Core-core repulsion = 13140.412885 eV Total energy + Delta-G solvation = -3158.924406 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.74718 -47.75102 -40.94826 -38.30297 -35.77471 -35.05280 -32.74585 -30.13744 -27.74678 -26.28365 -23.37874 -22.56923 -20.04670 -19.55465 -18.70927 -18.19214 -17.71426 -16.99839 -16.64578 -16.14659 -15.79982 -15.52727 -15.43699 -14.76424 -14.44572 -14.10040 -13.80734 -13.46500 -13.29867 -12.71961 -12.45950 -12.08170 -11.94699 -11.67463 -11.34282 -10.77543 -10.28335 -10.13267 -9.23135 -8.47041 -6.36839 0.48164 0.68868 1.58959 1.63291 1.84569 2.37110 2.65071 2.72795 3.03963 3.26268 3.48061 3.57352 4.10526 4.22897 4.46516 4.65119 4.84733 5.07980 5.46450 5.58624 5.81541 5.95036 6.36634 6.71313 6.80050 6.88633 7.04380 7.66019 8.07801 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.013116 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.613218 B = 2134.234805 C = 3072.157533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.003 3.997 3 Si 1.108 2.892 4 H -0.278 1.278 5 H -0.250 1.250 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.008 3.992 10 C 0.350 3.650 11 N -0.832 5.832 12 N -0.566 5.566 13 C 0.206 3.794 14 O -0.490 6.490 15 C -0.168 4.168 16 C -0.228 4.228 17 C 0.335 3.665 18 F -0.215 7.215 19 F -0.205 7.205 20 H 0.270 0.730 21 H 0.410 0.590 22 H 0.394 0.606 23 H 0.397 0.603 24 H 0.133 0.867 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.168 -1.640 1.183 6.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.213 4.213 3 Si 0.925 3.075 4 H -0.203 1.203 5 H -0.174 1.174 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.100 0.900 9 C 0.000 4.000 10 C 0.105 3.895 11 N -0.380 5.380 12 N -0.295 5.295 13 C 0.034 3.966 14 O -0.297 6.297 15 C -0.192 4.192 16 C -0.236 4.236 17 C 0.282 3.718 18 F -0.196 7.196 19 F -0.186 7.186 20 H 0.080 0.920 21 H 0.243 0.757 22 H 0.222 0.778 23 H 0.253 0.747 24 H 0.150 0.850 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.953 0.040 1.596 5.204 hybrid contribution 0.441 -1.905 -0.477 2.013 sum 5.394 -1.865 1.119 5.816 Atomic orbital electron populations 1.70644 1.08691 1.31934 1.31290 1.28137 0.95393 1.06742 0.91003 0.83111 0.74845 0.70070 0.79454 1.20257 1.17413 1.19181 1.20179 1.02811 0.93783 1.39363 0.89960 1.18003 0.96409 0.94357 0.91235 1.18587 0.95789 0.86173 0.88910 1.41770 1.50074 1.10854 1.35307 1.66121 1.25444 0.99592 1.38345 1.18317 1.00021 0.85268 0.93020 1.84712 1.43063 1.35495 1.66421 1.20921 1.00709 0.99367 0.98189 1.20219 1.09390 0.96215 0.97788 1.20050 0.99244 0.70327 0.82175 1.92895 1.91912 1.54849 1.79973 1.92970 1.96733 1.50227 1.78662 0.91982 0.75697 0.77788 0.74669 0.84961 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.48 12.42 21.82 0.27 -40.21 15 2 C 0.00 0.12 3.22 85.22 0.27 0.39 15 3 Si 1.11 38.72 29.89 68.60 2.05 40.77 15 4 H -0.28 -9.87 7.11 99.48 0.71 -9.16 15 5 H -0.25 -7.76 7.11 99.48 0.71 -7.05 15 6 H -0.27 -9.01 7.11 99.48 0.71 -8.30 15 7 C -0.53 -25.22 6.35 23.33 0.15 -25.07 15 8 H 0.08 3.80 7.64 -2.91 -0.02 3.77 15 9 C 0.01 0.41 4.77 -21.05 -0.10 0.31 15 10 C 0.35 16.89 6.99 134.07 0.94 17.83 15 11 N -0.83 -35.49 7.95 -54.39 -0.43 -35.92 15 12 N -0.57 -27.37 10.41 -304.47 -3.17 -30.54 15 13 C 0.21 9.34 7.74 84.89 0.66 10.00 15 14 O -0.49 -18.91 13.54 -87.89 -1.19 -20.10 15 15 C -0.17 -7.33 9.34 22.21 0.21 -7.12 15 16 C -0.23 -10.38 5.77 -19.51 -0.11 -10.49 15 17 C 0.34 13.31 5.34 71.23 0.38 13.69 15 18 F -0.21 -8.30 16.34 44.97 0.73 -7.57 15 19 F -0.20 -9.19 15.10 44.97 0.68 -8.51 15 20 H 0.27 14.96 7.44 -92.71 -0.69 14.27 15 21 H 0.41 17.06 6.04 -92.71 -0.56 16.50 15 22 H 0.39 15.14 8.95 -92.71 -0.83 14.31 15 23 H 0.40 10.76 9.06 -74.06 -0.67 10.09 15 24 H 0.13 5.15 7.46 -2.91 -0.02 5.13 15 25 H 0.14 4.37 8.14 -2.39 -0.02 4.35 15 Total: -1.00 -59.28 231.25 0.64 -58.63 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.69 Total: 43.91 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 2.39 Total: -0.46 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -3.33 Total: -106.68 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.19 Total: -20.10 kcal Atomic # 9 Polarization: -17.50 SS G_CDS: 1.41 Total: -16.08 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.05 Total: 40.77 kcal Total: -59.28 0.64 -58.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238666285.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.447 kcal (2) G-P(sol) polarization free energy of solvation -59.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds