Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30925 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48493 * 109.47349 * 239.99948 * 3 2 1 5 5 H 1.48500 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46821 * 120.00055 * 3 2 1 7 7 C 1.39916 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00360 * 160.21301 * 7 2 1 9 9 C 1.40899 * 119.99514 * 340.21859 * 7 2 1 10 10 C 1.41620 * 120.75209 * 140.38015 * 9 7 2 11 11 N 1.38188 * 119.88333 * 359.97438 * 10 9 7 12 12 N 1.32226 * 120.24027 * 179.70183 * 10 9 7 13 13 C 1.32150 * 122.03096 * 0.27349 * 12 10 9 14 14 C 1.38208 * 121.54307 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.22982 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.47439 * 119.99307 * 15 14 13 17 17 F 1.39896 * 109.47623 * 239.99979 * 15 14 13 18 18 C 1.38849 * 119.54874 * 359.97438 * 14 13 12 19 19 O 1.35570 * 120.92752 * 180.02562 * 18 14 13 20 20 H 0.97006 * 119.99787 * 355.54085 * 1 2 3 21 21 H 0.96996 * 120.00756 * 172.47332 * 11 10 9 22 22 H 0.97008 * 119.99922 * 352.20035 * 11 10 9 23 23 H 1.08000 * 119.22756 * 179.97438 * 13 12 10 24 24 H 1.09006 * 109.46520 * 359.97438 * 15 14 13 25 25 H 0.96700 * 114.00058 * 90.00474 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6964 -1.2124 5 1 1.2783 2.7464 0.0006 6 1 3.0971 1.6963 1.2126 7 6 2.0088 -1.2117 -0.0005 8 1 3.0410 -1.2392 -0.3172 9 6 1.3666 -2.3961 0.4119 10 6 1.5970 -3.6183 -0.2653 11 7 2.4600 -3.6558 -1.3439 12 7 0.9934 -4.7249 0.1340 13 6 0.1603 -4.7379 1.1598 14 6 -0.1262 -3.5893 1.8730 15 6 -1.0805 -3.6380 3.0383 16 9 -0.4190 -3.2266 4.2004 17 9 -2.1624 -2.7863 2.7912 18 6 0.4720 -2.3902 1.5093 19 8 0.2114 -1.2469 2.1897 20 1 -0.4850 0.8376 0.0653 21 1 2.7042 -4.5066 -1.7405 22 1 2.8186 -2.8308 -1.7070 23 1 -0.3082 -5.6676 1.4469 24 1 -1.4435 -4.6576 3.1682 25 1 0.8097 -1.0860 2.9321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238683803.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = -114.869272 kcal Electronic energy + Delta-G solvation = -16303.918604 eV Core-core repulsion = 13146.044103 eV Total energy + Delta-G solvation = -3157.874501 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.13410 -46.13738 -38.88387 -35.97919 -34.07216 -32.92861 -30.19117 -29.42251 -25.44784 -24.47963 -21.83793 -20.54934 -17.65102 -17.38175 -16.87972 -16.39788 -15.90622 -15.71015 -14.97274 -14.81616 -13.83633 -13.31492 -13.07175 -12.98404 -12.67130 -12.54216 -12.16091 -11.95812 -11.54487 -11.21518 -10.86907 -10.65739 -10.34911 -9.64240 -9.25897 -9.03083 -8.32211 -7.83004 -6.95339 -6.61505 -4.31904 2.45066 2.67921 3.09687 3.11418 3.14471 3.98640 4.53438 4.62699 4.76230 5.08859 5.28241 5.48538 5.64602 5.88506 5.93663 6.60375 6.80319 6.99531 7.14505 7.49351 7.55554 8.06316 8.41586 8.52981 8.69153 8.81116 9.13063 9.51920 10.29338 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.012749 C = 0.009234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.205752 B = 2195.642290 C = 3031.644407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.090 3.910 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.477 4.477 8 H 0.077 0.923 9 C 0.012 3.988 10 C 0.341 3.659 11 N -0.852 5.852 12 N -0.545 5.545 13 C 0.061 3.939 14 C -0.269 4.269 15 C 0.331 3.669 16 F -0.214 7.214 17 F -0.203 7.203 18 C 0.122 3.878 19 O -0.459 6.459 20 H 0.282 0.718 21 H 0.385 0.615 22 H 0.405 0.595 23 H 0.130 0.870 24 H 0.100 0.900 25 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 -2.967 2.563 4.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.507 4.507 8 H 0.095 0.905 9 C 0.005 3.995 10 C 0.101 3.899 11 N -0.398 5.398 12 N -0.264 5.264 13 C -0.094 4.094 14 C -0.276 4.276 15 C 0.276 3.724 16 F -0.196 7.196 17 F -0.184 7.184 18 C 0.069 3.931 19 O -0.264 6.264 20 H 0.093 0.907 21 H 0.212 0.788 22 H 0.236 0.764 23 H 0.147 0.853 24 H 0.117 0.883 25 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.788 -3.471 1.740 3.962 hybrid contribution 0.651 1.671 0.600 1.891 sum 1.440 -1.800 2.340 3.285 Atomic orbital electron populations 1.69734 1.07459 1.29739 1.31036 1.25634 0.94431 1.00367 0.92764 0.86525 0.80136 0.81318 0.79558 1.19430 1.20567 1.19150 1.18821 0.98232 0.91414 1.42237 0.90513 1.18193 0.95595 0.92678 0.93078 1.18649 0.92545 0.90005 0.88732 1.41656 1.52971 1.10306 1.34842 1.66674 1.12804 1.29420 1.17454 1.21015 0.98819 0.95143 0.94378 1.21070 1.07344 0.96547 1.02627 1.20023 0.80662 0.90784 0.80884 1.92916 1.82095 1.92648 1.51892 1.92980 1.56381 1.74577 1.94467 1.18044 0.98911 0.83431 0.92715 1.84866 1.56316 1.39456 1.45768 0.90736 0.78773 0.76450 0.85275 0.88304 0.79035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.01 11.31 55.55 0.63 -19.38 15 2 C 0.09 2.22 4.47 -17.31 -0.08 2.14 15 3 Si 0.90 18.49 29.61 -169.99 -5.03 13.45 15 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.48 -11.87 7.96 -37.95 -0.30 -12.17 15 8 H 0.08 1.80 7.40 -52.49 -0.39 1.41 15 9 C 0.01 0.32 5.38 -106.33 -0.57 -0.25 15 10 C 0.34 8.06 7.79 -155.00 -1.21 6.85 15 11 N -0.85 -16.60 8.95 31.44 0.28 -16.31 15 12 N -0.55 -12.59 10.37 -11.95 -0.12 -12.72 15 13 C 0.06 1.31 10.80 -17.43 -0.19 1.13 15 14 C -0.27 -6.07 5.39 -104.41 -0.56 -6.63 15 15 C 0.33 6.41 5.15 36.00 0.19 6.59 15 16 F -0.21 -4.17 17.03 2.25 0.04 -4.13 15 17 F -0.20 -4.42 17.03 2.25 0.04 -4.38 15 18 C 0.12 3.05 6.11 -38.08 -0.23 2.82 15 19 O -0.46 -11.24 9.69 -18.41 -0.18 -11.42 15 20 H 0.28 7.01 8.30 -40.82 -0.34 6.67 15 21 H 0.39 6.47 8.95 -40.82 -0.37 6.10 15 22 H 0.40 7.50 7.42 -40.82 -0.30 7.19 15 23 H 0.13 2.29 7.92 -52.49 -0.42 1.87 15 24 H 0.10 1.48 7.87 -51.93 -0.41 1.08 15 25 H 0.36 7.49 9.06 45.56 0.41 7.91 15 LS Contribution 235.29 15.07 3.55 3.55 Total: -1.00 -29.71 235.29 -4.36 -34.07 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.60 Total: 16.80 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.96 Total: 0.47 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.79 Total: -48.41 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.18 Total: -11.42 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.71 -4.36 -34.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238683803.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.796 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds