Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30925 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48493 * 109.47349 * 239.99948 * 3 2 1 5 5 H 1.48500 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46821 * 120.00055 * 3 2 1 7 7 C 1.39916 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00360 * 160.21301 * 7 2 1 9 9 C 1.40899 * 119.99514 * 340.21859 * 7 2 1 10 10 C 1.41620 * 120.75209 * 140.38015 * 9 7 2 11 11 N 1.38188 * 119.88333 * 359.97438 * 10 9 7 12 12 N 1.32226 * 120.24027 * 179.70183 * 10 9 7 13 13 C 1.32150 * 122.03096 * 0.27349 * 12 10 9 14 14 C 1.38208 * 121.54307 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.22982 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.47439 * 119.99307 * 15 14 13 17 17 F 1.39896 * 109.47623 * 239.99979 * 15 14 13 18 18 C 1.38849 * 119.54874 * 359.97438 * 14 13 12 19 19 O 1.35570 * 120.92752 * 180.02562 * 18 14 13 20 20 H 0.97006 * 119.99787 * 355.54085 * 1 2 3 21 21 H 0.96996 * 120.00756 * 172.47332 * 11 10 9 22 22 H 0.97008 * 119.99922 * 352.20035 * 11 10 9 23 23 H 1.08000 * 119.22756 * 179.97438 * 13 12 10 24 24 H 1.09006 * 109.46520 * 359.97438 * 15 14 13 25 25 H 0.96700 * 114.00058 * 90.00474 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6964 -1.2124 5 1 1.2783 2.7464 0.0006 6 1 3.0971 1.6963 1.2126 7 6 2.0088 -1.2117 -0.0005 8 1 3.0410 -1.2392 -0.3172 9 6 1.3666 -2.3961 0.4119 10 6 1.5970 -3.6183 -0.2653 11 7 2.4600 -3.6558 -1.3439 12 7 0.9934 -4.7249 0.1340 13 6 0.1603 -4.7379 1.1598 14 6 -0.1262 -3.5893 1.8730 15 6 -1.0805 -3.6380 3.0383 16 9 -0.4190 -3.2266 4.2004 17 9 -2.1624 -2.7863 2.7912 18 6 0.4720 -2.3902 1.5093 19 8 0.2114 -1.2469 2.1897 20 1 -0.4850 0.8376 0.0653 21 1 2.7042 -4.5066 -1.7405 22 1 2.8186 -2.8308 -1.7070 23 1 -0.3082 -5.6676 1.4469 24 1 -1.4435 -4.6576 3.1682 25 1 0.8097 -1.0860 2.9321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238683803.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = -136.762427 kcal Electronic energy + Delta-G solvation = -16304.867962 eV Core-core repulsion = 13146.044103 eV Total energy + Delta-G solvation = -3158.823859 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.68720 -47.70889 -40.64994 -37.80058 -35.81732 -34.69387 -31.95011 -31.15707 -27.26143 -26.09083 -23.63457 -22.27668 -19.41540 -19.12834 -18.56940 -17.96376 -17.52134 -17.38899 -16.71770 -16.53569 -15.54791 -15.05609 -14.79790 -14.59434 -14.37233 -14.12103 -13.91435 -13.61424 -13.23570 -12.88833 -12.61766 -12.24849 -12.03466 -11.32471 -11.03888 -10.82242 -10.11086 -9.64937 -8.72728 -8.38736 -6.18556 0.69253 0.87430 1.43207 1.49516 1.53187 2.27930 2.82147 3.04177 3.20857 3.47971 3.54576 3.89145 3.98724 4.29751 4.37892 4.85887 5.07694 5.24387 5.32440 5.70457 5.85696 6.25171 6.65950 6.86727 6.94774 7.05635 7.34778 7.79681 8.49467 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.012749 C = 0.009234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.205752 B = 2195.642290 C = 3031.644407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.054 3.946 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.498 4.498 8 H 0.082 0.918 9 C -0.026 4.026 10 C 0.333 3.667 11 N -0.837 5.837 12 N -0.558 5.558 13 C 0.073 3.927 14 C -0.289 4.289 15 C 0.330 3.670 16 F -0.217 7.217 17 F -0.220 7.220 18 C 0.103 3.897 19 O -0.471 6.471 20 H 0.280 0.720 21 H 0.400 0.600 22 H 0.409 0.591 23 H 0.175 0.825 24 H 0.156 0.844 25 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -3.926 2.798 5.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.163 4.163 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.529 4.529 8 H 0.100 0.900 9 C -0.034 4.034 10 C 0.092 3.908 11 N -0.384 5.384 12 N -0.277 5.277 13 C -0.082 4.082 14 C -0.296 4.296 15 C 0.276 3.724 16 F -0.198 7.198 17 F -0.201 7.201 18 C 0.050 3.950 19 O -0.278 6.278 20 H 0.090 0.910 21 H 0.229 0.771 22 H 0.240 0.760 23 H 0.192 0.808 24 H 0.173 0.827 25 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.148 -4.447 1.951 4.990 hybrid contribution 0.553 1.791 0.537 1.950 sum 1.701 -2.655 2.488 4.017 Atomic orbital electron populations 1.69829 1.09063 1.30247 1.33728 1.26358 0.94855 1.03328 0.91789 0.85480 0.78647 0.77067 0.79767 1.18375 1.20857 1.18916 1.19003 0.98483 0.91989 1.43391 0.90037 1.18561 0.97031 0.93716 0.94120 1.18938 0.92698 0.89803 0.89314 1.41593 1.51742 1.11400 1.33642 1.66833 1.13556 1.28997 1.18290 1.21813 0.97097 0.96530 0.92722 1.21431 1.08034 0.95974 1.04151 1.20430 0.79553 0.92810 0.79597 1.92907 1.82230 1.92907 1.51773 1.92947 1.57068 1.75553 1.94576 1.18463 0.99331 0.84259 0.92995 1.84824 1.56764 1.39951 1.46256 0.91017 0.77108 0.75950 0.80814 0.82726 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.37 11.31 21.83 0.25 -43.12 15 2 C 0.05 2.68 4.47 85.23 0.38 3.06 15 3 Si 0.97 38.22 29.61 68.60 2.03 40.25 15 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 15 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 7 C -0.50 -24.96 7.96 23.33 0.19 -24.78 15 8 H 0.08 3.83 7.40 -2.91 -0.02 3.81 15 9 C -0.03 -1.35 5.38 -20.97 -0.11 -1.46 15 10 C 0.33 15.46 7.79 134.01 1.04 16.50 15 11 N -0.84 -31.69 8.95 -54.43 -0.49 -32.18 15 12 N -0.56 -24.64 10.37 -191.73 -1.99 -26.63 15 13 C 0.07 2.94 10.80 84.64 0.91 3.85 15 14 C -0.29 -12.54 5.39 -19.73 -0.11 -12.65 15 15 C 0.33 11.95 5.15 71.23 0.37 12.31 15 16 F -0.22 -8.04 17.03 44.97 0.77 -7.28 15 17 F -0.22 -9.29 17.03 44.97 0.77 -8.52 15 18 C 0.10 5.12 6.11 23.24 0.14 5.27 15 19 O -0.47 -23.40 9.69 -88.78 -0.86 -24.26 15 20 H 0.28 14.29 8.30 -92.70 -0.77 13.52 15 21 H 0.40 12.74 8.95 -92.71 -0.83 11.91 15 22 H 0.41 14.84 7.42 -92.70 -0.69 14.15 15 23 H 0.17 5.30 7.92 -2.91 -0.02 5.28 15 24 H 0.16 3.91 7.87 -2.38 -0.02 3.89 15 25 H 0.37 15.71 9.06 -74.06 -0.67 15.04 15 Total: -1.00 -63.42 235.29 2.39 -61.04 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.90 Total: 38.60 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 2.81 Total: 2.11 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -2.23 Total: -101.93 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.86 Total: -24.26 kcal Atomic # 9 Polarization: -17.33 SS G_CDS: 1.53 Total: -15.80 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -63.42 2.39 -61.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238683803.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.726 kcal (2) G-P(sol) polarization free energy of solvation -63.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds