Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30528 * 1 3 3 Si 1.86800 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46850 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99772 * 3 2 1 6 6 H 1.48502 * 109.47154 * 149.99864 * 3 2 1 7 7 C 1.40673 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 179.72473 * 7 2 1 9 9 C 1.43205 * 119.99740 * 0.02562 * 7 2 1 10 10 C 3.52642 * 80.20652 * 179.97438 * 2 1 3 11 11 C 4.89536 * 74.40612 * 179.97438 * 2 1 3 12 12 C 1.40399 * 120.21605 * 267.08479 * 11 10 9 13 13 C 1.37694 * 119.77274 * 179.97438 * 12 11 10 14 14 C 1.38565 * 120.22425 * 0.02562 * 13 12 11 15 15 C 1.38523 * 120.43814 * 359.97438 * 14 13 12 16 16 C 1.37743 * 120.22198 * 359.74000 * 15 14 13 17 17 C 1.50699 * 120.11542 * 180.27767 * 16 15 14 18 18 C 1.50696 * 109.47180 * 265.23850 * 17 16 15 19 19 O 1.20830 * 120.00250 * 359.97438 * 18 17 16 20 20 O 1.34227 * 120.00159 * 180.02562 * 18 17 16 21 21 H 0.97004 * 120.00010 * 0.02562 * 1 2 3 22 22 H 1.07991 * 120.11031 * 359.95348 * 12 11 10 23 23 H 1.08008 * 119.89025 * 179.97438 * 13 12 11 24 24 H 1.08002 * 119.78462 * 179.97438 * 14 13 12 25 25 H 1.08009 * 119.88797 * 180.02562 * 15 14 13 26 26 H 1.08998 * 109.47157 * 25.23645 * 17 16 15 27 27 H 1.08996 * 109.46812 * 145.23737 * 17 16 15 28 28 H 0.96702 * 117.00246 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0463 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5370 1.4400 0.7001 7 6 2.0086 -1.2183 0.0005 8 1 3.0886 -1.2183 -0.0039 9 6 1.2925 -2.4584 0.0005 10 6 0.7054 -3.4750 0.0016 11 6 -0.0107 -4.7152 0.0021 12 6 -0.3103 -5.3575 1.2141 13 6 -0.9998 -6.5493 1.2040 14 6 -1.3972 -7.1152 0.0031 15 6 -1.1063 -6.4892 -1.1978 16 6 -0.4227 -5.2934 -1.2087 17 6 -0.1130 -4.6113 -2.5163 18 6 1.2710 -4.9988 -2.9696 19 8 1.9377 -5.7513 -2.2993 20 8 1.7635 -4.5073 -4.1174 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0008 -4.9185 2.1509 23 1 -1.2310 -7.0453 2.1352 24 1 -1.9373 -8.0504 0.0035 25 1 -1.4207 -6.9379 -2.1287 26 1 -0.8406 -4.9184 -3.2676 27 1 -0.1624 -3.5307 -2.3830 28 1 2.6556 -4.7848 -4.3669 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238694557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = -41.155348 kcal Electronic energy + Delta-G solvation = -14675.097396 eV Core-core repulsion = 12042.356150 eV Total energy + Delta-G solvation = -2632.741246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.89801 -38.34362 -35.65701 -33.72617 -32.63735 -31.71166 -29.38169 -27.64411 -25.63536 -22.35239 -22.13203 -20.24191 -18.52189 -17.67338 -16.56896 -15.98492 -15.60871 -15.21980 -14.86511 -14.36247 -13.71640 -12.93806 -12.89278 -12.64988 -12.06752 -11.90510 -11.70452 -11.33954 -11.22107 -11.05543 -10.82189 -10.62859 -10.29726 -10.12650 -9.77326 -9.32579 -8.53019 -8.30107 -7.18140 -6.70853 -4.58381 1.78075 1.93029 2.71384 3.00011 3.08714 3.13271 3.53492 3.93183 4.17131 4.20723 5.10988 5.29466 5.37943 5.42041 5.55262 5.57433 5.73081 5.87038 6.03143 6.06736 6.23465 6.61215 6.67917 6.89362 6.94624 7.01694 7.20217 7.38190 7.53893 8.08924 8.34320 8.46911 8.82783 9.70679 10.36754 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.007644 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.035662 B = 3662.261784 C = 4451.328300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.081 3.919 3 Si 0.923 3.077 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.416 4.416 11 C 0.134 3.866 12 C -0.128 4.128 13 C -0.113 4.113 14 C -0.152 4.152 15 C -0.102 4.102 16 C -0.092 4.092 17 C -0.064 4.064 18 C 0.486 3.514 19 O -0.508 6.508 20 O -0.521 6.521 21 H 0.280 0.720 22 H 0.120 0.880 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -7.111 -4.439 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.134 4.134 3 Si 0.747 3.253 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.110 0.890 9 C 0.094 3.906 10 C -0.419 4.419 11 C 0.134 3.866 12 C -0.146 4.146 13 C -0.131 4.131 14 C -0.170 4.170 15 C -0.120 4.120 16 C -0.092 4.092 17 C -0.101 4.101 18 C 0.328 3.672 19 O -0.395 6.395 20 O -0.333 6.333 21 H 0.090 0.910 22 H 0.138 0.862 23 H 0.133 0.867 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.141 0.859 28 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.334 -7.051 -4.130 8.498 hybrid contribution 0.885 0.628 -0.096 1.090 sum -1.449 -6.423 -4.227 7.824 Atomic orbital electron populations 1.69608 1.07555 1.29259 1.38632 1.25883 0.94833 1.00601 0.92106 0.86088 0.80046 0.80000 0.79170 1.19374 1.20193 1.18537 1.18257 0.93094 0.85241 1.52102 0.88968 1.19807 0.90296 0.89726 0.90802 1.18043 1.04062 0.95398 1.24375 1.15973 0.90641 0.88863 0.91151 1.21466 0.99878 0.95477 0.97766 1.20950 0.98754 0.95847 0.97557 1.20945 1.03244 1.00327 0.92469 1.20730 0.99132 0.94420 0.97754 1.19516 1.01066 0.95673 0.92971 1.20125 0.90148 1.04528 0.95300 1.23436 0.89588 0.76779 0.77411 1.90694 1.60292 1.34399 1.54139 1.84545 1.37518 1.70059 1.41160 0.90968 0.86240 0.86719 0.86843 0.86814 0.87871 0.85922 0.73879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.80 13.25 55.59 0.74 -22.07 15 2 C 0.08 2.14 5.51 -17.19 -0.09 2.04 15 3 Si 0.92 19.26 29.57 -169.99 -5.03 14.24 15 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 15 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 7 C -0.45 -12.75 9.61 -36.74 -0.35 -13.10 15 8 H 0.09 2.43 7.86 -52.49 -0.41 2.02 15 9 C 0.09 2.76 13.02 -38.84 -0.51 2.25 15 10 C -0.42 -11.33 11.85 -38.83 -0.46 -11.79 15 11 C 0.13 3.10 5.78 -106.36 -0.61 2.49 15 12 C -0.13 -2.61 9.79 -38.97 -0.38 -2.99 15 13 C -0.11 -1.90 10.02 -39.66 -0.40 -2.30 15 14 C -0.15 -2.40 10.05 -39.36 -0.40 -2.80 15 15 C -0.10 -1.73 9.66 -39.66 -0.38 -2.11 15 16 C -0.09 -1.84 4.43 -104.01 -0.46 -2.30 15 17 C -0.06 -1.16 5.47 -29.04 -0.16 -1.32 15 18 C 0.49 9.10 8.32 36.00 0.30 9.40 15 19 O -0.51 -11.08 16.79 -18.75 -0.31 -11.40 15 20 O -0.52 -7.96 13.42 -39.25 -0.53 -8.49 15 21 H 0.28 6.99 8.29 -40.82 -0.34 6.65 15 22 H 0.12 2.37 8.06 -52.49 -0.42 1.95 15 23 H 0.11 1.56 8.06 -52.48 -0.42 1.14 15 24 H 0.11 1.42 8.06 -52.49 -0.42 0.99 15 25 H 0.11 1.55 8.06 -52.48 -0.42 1.13 15 26 H 0.10 1.44 8.05 -51.93 -0.42 1.02 15 27 H 0.12 2.51 7.30 -51.93 -0.38 2.13 15 28 H 0.40 4.29 9.10 45.56 0.41 4.71 15 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -33.05 270.71 -6.58 -39.63 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -1.62 Total: 6.53 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -3.91 Total: -22.53 kcal Atomic # 7 Polarization: -22.80 SS G_CDS: 0.74 Total: -22.07 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.84 Total: -19.88 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.05 -6.58 -39.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238694557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.525 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds