Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30528 * 1 3 3 Si 1.86800 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46850 * 270.00120 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99772 * 3 2 1 6 6 H 1.48502 * 109.47154 * 149.99864 * 3 2 1 7 7 C 1.40673 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 179.72473 * 7 2 1 9 9 C 1.43205 * 119.99740 * 0.02562 * 7 2 1 10 10 C 3.52642 * 80.20652 * 179.97438 * 2 1 3 11 11 C 4.89536 * 74.40612 * 179.97438 * 2 1 3 12 12 C 1.40399 * 120.21605 * 267.08479 * 11 10 9 13 13 C 1.37694 * 119.77274 * 179.97438 * 12 11 10 14 14 C 1.38565 * 120.22425 * 0.02562 * 13 12 11 15 15 C 1.38523 * 120.43814 * 359.97438 * 14 13 12 16 16 C 1.37743 * 120.22198 * 359.74000 * 15 14 13 17 17 C 1.50699 * 120.11542 * 180.27767 * 16 15 14 18 18 C 1.50696 * 109.47180 * 265.23850 * 17 16 15 19 19 O 1.20830 * 120.00250 * 359.97438 * 18 17 16 20 20 O 1.34227 * 120.00159 * 180.02562 * 18 17 16 21 21 H 0.97004 * 120.00010 * 0.02562 * 1 2 3 22 22 H 1.07991 * 120.11031 * 359.95348 * 12 11 10 23 23 H 1.08008 * 119.89025 * 179.97438 * 13 12 11 24 24 H 1.08002 * 119.78462 * 179.97438 * 14 13 12 25 25 H 1.08009 * 119.88797 * 180.02562 * 15 14 13 26 26 H 1.08998 * 109.47157 * 25.23645 * 17 16 15 27 27 H 1.08996 * 109.46812 * 145.23737 * 17 16 15 28 28 H 0.96702 * 117.00246 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0463 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5370 1.4400 0.7001 7 6 2.0086 -1.2183 0.0005 8 1 3.0886 -1.2183 -0.0039 9 6 1.2925 -2.4584 0.0005 10 6 0.7054 -3.4750 0.0016 11 6 -0.0107 -4.7152 0.0021 12 6 -0.3103 -5.3575 1.2141 13 6 -0.9998 -6.5493 1.2040 14 6 -1.3972 -7.1152 0.0031 15 6 -1.1063 -6.4892 -1.1978 16 6 -0.4227 -5.2934 -1.2087 17 6 -0.1130 -4.6113 -2.5163 18 6 1.2710 -4.9988 -2.9696 19 8 1.9377 -5.7513 -2.2993 20 8 1.7635 -4.5073 -4.1174 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0008 -4.9185 2.1509 23 1 -1.2310 -7.0453 2.1352 24 1 -1.9373 -8.0504 0.0035 25 1 -1.4207 -6.9379 -2.1287 26 1 -0.8406 -4.9184 -3.2676 27 1 -0.1624 -3.5307 -2.3830 28 1 2.6556 -4.7848 -4.3669 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238694557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = -62.511477 kcal Electronic energy + Delta-G solvation = -14676.023467 eV Core-core repulsion = 12042.356150 eV Total energy + Delta-G solvation = -2633.667318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.36283 -39.78688 -37.07370 -35.72798 -34.20129 -33.42292 -31.11250 -29.13268 -27.60343 -23.88963 -23.58203 -21.70983 -20.41159 -19.11585 -18.22011 -17.45892 -17.07137 -17.03891 -16.32223 -15.83690 -15.34585 -14.49748 -14.35253 -14.09710 -13.83083 -13.36264 -13.26059 -13.11350 -13.08242 -12.51950 -12.28318 -12.11030 -11.93958 -11.65511 -11.61400 -11.13078 -10.56003 -9.71867 -8.94920 -8.67371 -6.69932 0.25289 0.49273 1.23360 1.34003 1.36462 1.53653 2.17293 2.19656 2.21350 2.61395 3.37198 3.46797 3.70108 3.97284 4.06424 4.26519 4.34824 4.49974 4.56000 4.70490 4.79749 5.06942 5.18587 5.24130 5.51720 5.59640 5.61593 5.84829 5.99363 6.19488 6.44865 6.76764 7.00844 7.62011 8.41463 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.007644 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.035662 B = 3662.261784 C = 4451.328300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.034 3.966 3 Si 1.007 2.993 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.015 3.985 10 C -0.404 4.404 11 C 0.068 3.932 12 C -0.145 4.145 13 C -0.109 4.109 14 C -0.130 4.130 15 C -0.102 4.102 16 C -0.099 4.099 17 C -0.066 4.066 18 C 0.489 3.511 19 O -0.545 6.545 20 O -0.512 6.512 21 H 0.289 0.711 22 H 0.108 0.892 23 H 0.153 0.847 24 H 0.163 0.837 25 H 0.156 0.844 26 H 0.151 0.849 27 H 0.091 0.909 28 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -8.488 -5.273 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.177 4.177 3 Si 0.825 3.175 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.522 4.522 8 H 0.112 0.888 9 C 0.014 3.986 10 C -0.407 4.407 11 C 0.067 3.933 12 C -0.163 4.163 13 C -0.127 4.127 14 C -0.148 4.148 15 C -0.120 4.120 16 C -0.099 4.099 17 C -0.103 4.103 18 C 0.333 3.667 19 O -0.435 6.435 20 O -0.325 6.325 21 H 0.100 0.900 22 H 0.126 0.874 23 H 0.171 0.829 24 H 0.181 0.819 25 H 0.173 0.827 26 H 0.168 0.832 27 H 0.109 0.891 28 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.365 -8.443 -4.987 10.367 hybrid contribution 1.103 0.823 0.128 1.383 sum -2.262 -7.620 -4.859 9.316 Atomic orbital electron populations 1.69693 1.09540 1.30981 1.39180 1.27051 0.95737 1.04394 0.90491 0.84862 0.78568 0.74148 0.79912 1.17971 1.18827 1.17703 1.18671 0.93513 0.86223 1.53766 0.88817 1.20596 0.93618 0.91691 0.92726 1.19144 1.02905 0.96037 1.22582 1.16368 0.94048 0.88921 0.93915 1.21560 1.01083 0.97177 0.96475 1.21361 0.97101 0.94165 1.00080 1.21585 1.00804 1.01127 0.91285 1.21239 0.97601 0.92903 1.00256 1.19762 1.01029 0.96876 0.92215 1.20200 0.91391 1.02488 0.96263 1.23513 0.89572 0.76021 0.77579 1.90675 1.61166 1.36336 1.55337 1.84492 1.39128 1.69340 1.39566 0.90047 0.87386 0.82920 0.81934 0.82658 0.83152 0.89115 0.71440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.95 13.25 21.96 0.29 -49.66 15 2 C 0.03 1.87 5.51 85.48 0.47 2.35 15 3 Si 1.01 40.10 29.57 68.60 2.03 42.13 15 4 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 5 H -0.26 -9.87 7.11 99.48 0.71 -9.17 15 6 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 7 C -0.49 -29.20 9.61 24.11 0.23 -28.97 15 8 H 0.09 5.26 7.86 -2.91 -0.02 5.24 15 9 C 0.01 0.93 13.02 30.02 0.39 1.32 15 10 C -0.40 -23.57 11.85 30.02 0.36 -23.21 15 11 C 0.07 3.25 5.78 -20.99 -0.12 3.12 15 12 C -0.14 -6.00 9.79 22.67 0.22 -5.78 15 13 C -0.11 -3.37 10.02 22.22 0.22 -3.15 15 14 C -0.13 -3.50 10.05 22.42 0.23 -3.28 15 15 C -0.10 -3.07 9.66 22.22 0.21 -2.86 15 16 C -0.10 -3.89 4.43 -19.46 -0.09 -3.98 15 17 C -0.07 -2.40 5.47 29.10 0.16 -2.24 15 18 C 0.49 18.30 8.32 71.23 0.59 18.89 15 19 O -0.54 -23.98 16.79 21.95 0.37 -23.61 15 20 O -0.51 -15.23 13.42 -51.38 -0.69 -15.91 15 21 H 0.29 14.86 8.29 -92.71 -0.77 14.09 15 22 H 0.11 4.52 8.06 -2.92 -0.02 4.50 15 23 H 0.15 3.50 8.06 -2.91 -0.02 3.48 15 24 H 0.16 2.87 8.06 -2.91 -0.02 2.85 15 25 H 0.16 3.36 8.06 -2.91 -0.02 3.34 15 26 H 0.15 3.83 8.05 -2.39 -0.02 3.81 15 27 H 0.09 3.91 7.30 -2.39 -0.02 3.89 15 28 H 0.42 8.58 9.10 -74.06 -0.67 7.90 15 Total: -1.00 -78.15 270.71 5.40 -72.75 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.52 Total: 22.10 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 2.88 Total: -47.79 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.29 Total: -49.66 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.32 Total: -39.52 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -78.15 5.40 -72.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238694557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.240 kcal (2) G-P(sol) polarization free energy of solvation -78.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds