Wall clock time and date at job start Mon Mar 30 2020 02:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86804 * 120.00015 * 2 1 4 4 H 1.48502 * 109.47095 * 269.99984 * 3 2 1 5 5 H 1.48500 * 109.47105 * 29.99854 * 3 2 1 6 6 H 1.48502 * 109.47050 * 149.99672 * 3 2 1 7 7 C 1.39930 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00197 * 161.63671 * 7 2 1 9 9 C 1.41006 * 119.99776 * 341.63485 * 7 2 1 10 10 C 1.41755 * 120.67705 * 316.40047 * 9 7 2 11 11 N 1.38223 * 119.84911 * 359.97438 * 10 9 7 12 12 N 1.32202 * 120.29868 * 179.70155 * 10 9 7 13 13 C 1.31993 * 121.92098 * 0.27590 * 12 10 9 14 14 C 1.39163 * 121.36381 * 359.97438 * 13 12 10 15 15 O 1.35980 * 120.23939 * 180.02562 * 14 13 12 16 16 C 1.38425 * 119.52007 * 359.97438 * 14 13 12 17 17 C 1.50700 * 120.87540 * 180.02562 * 16 14 13 18 18 F 1.39891 * 109.47312 * 119.99760 * 17 16 14 19 19 F 1.39907 * 109.47078 * 240.00151 * 17 16 14 20 20 H 0.96996 * 120.00161 * 355.12413 * 1 2 3 21 21 H 0.96992 * 119.99729 * 169.48772 * 11 10 9 22 22 H 0.97007 * 119.99877 * 349.21618 * 11 10 9 23 23 H 1.08001 * 119.31976 * 180.02562 * 13 12 10 24 24 H 0.96701 * 113.99545 * 89.99958 * 15 14 13 25 25 H 1.09002 * 109.47017 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7001 7 6 2.0084 -1.2118 0.0005 8 1 3.0471 -1.2358 -0.2941 9 6 1.3573 -2.4017 0.3858 10 6 0.5075 -2.4264 1.5202 11 7 0.3130 -1.2747 2.2593 12 7 -0.1039 -3.5447 1.8713 13 6 0.0525 -4.6675 1.1952 14 6 0.8732 -4.7289 0.0730 15 8 1.0174 -5.8978 -0.6067 16 6 1.5408 -3.5913 -0.3468 17 6 2.4366 -3.6232 -1.5582 18 9 1.9623 -2.7173 -2.5129 19 9 3.7378 -3.2692 -1.1854 20 1 -0.4850 0.8370 0.0714 21 1 -0.3788 -1.2454 2.9385 22 1 0.8710 -0.4970 2.1014 23 1 -0.4678 -5.5568 1.5192 24 1 0.3729 -6.0218 -1.3169 25 1 2.4408 -4.6279 -1.9808 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238694701.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:00 Heat of formation + Delta-G solvation = -135.141883 kcal Electronic energy + Delta-G solvation = -16428.921399 eV Core-core repulsion = 13270.167812 eV Total energy + Delta-G solvation = -3158.753587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.62809 -47.63377 -40.74429 -38.25396 -35.95064 -34.24964 -33.07791 -29.76481 -27.86899 -26.42057 -23.29615 -22.43650 -19.96698 -18.80676 -18.33240 -18.21659 -17.86796 -17.19808 -16.88627 -16.34546 -15.79159 -15.19295 -14.74267 -14.63626 -14.25975 -14.07092 -14.05186 -13.37431 -13.21206 -13.10505 -12.65099 -12.12933 -11.99827 -11.82636 -11.18378 -10.87648 -10.19631 -9.87034 -8.73739 -8.17242 -6.39679 0.63505 0.79886 1.40967 1.43027 1.53458 2.21857 2.67781 3.14618 3.18065 3.37331 3.62965 3.66819 4.03255 4.39560 4.45156 4.78285 4.98790 5.20576 5.33935 5.56917 5.80658 6.27527 6.44936 6.80494 6.91747 6.94922 7.18859 7.83954 8.30663 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.013657 C = 0.009972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.621540 B = 2049.807090 C = 2807.109205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.044 3.956 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.256 1.256 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.074 0.926 9 C 0.051 3.949 10 C 0.350 3.650 11 N -0.822 5.822 12 N -0.542 5.542 13 C -0.002 4.002 14 C 0.052 3.948 15 O -0.498 6.498 16 C -0.270 4.270 17 C 0.336 3.664 18 F -0.215 7.215 19 F -0.219 7.219 20 H 0.291 0.709 21 H 0.391 0.609 22 H 0.403 0.597 23 H 0.160 0.840 24 H 0.398 0.602 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 -1.978 -0.961 2.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.172 4.172 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.180 1.180 6 H -0.184 1.184 7 C -0.520 4.520 8 H 0.092 0.908 9 C 0.043 3.957 10 C 0.105 3.895 11 N -0.367 5.367 12 N -0.263 5.263 13 C -0.153 4.153 14 C 0.003 3.997 15 O -0.308 6.308 16 C -0.279 4.279 17 C 0.283 3.717 18 F -0.196 7.196 19 F -0.201 7.201 20 H 0.101 0.899 21 H 0.219 0.781 22 H 0.236 0.764 23 H 0.177 0.823 24 H 0.254 0.746 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.326 -1.998 -0.012 2.024 hybrid contribution 0.342 1.158 -0.996 1.565 sum 0.668 -0.840 -1.008 1.472 Atomic orbital electron populations 1.69924 1.08293 1.31183 1.33744 1.26383 0.95233 1.03260 0.92365 0.85486 0.79666 0.77093 0.79317 1.19913 1.17957 1.18414 1.19325 0.98135 0.91942 1.42557 0.90837 1.17963 0.93664 0.93454 0.90629 1.18874 0.94676 0.86762 0.89187 1.41620 1.41038 1.12667 1.41391 1.66771 1.26959 0.98880 1.33692 1.22263 1.01838 0.95388 0.95823 1.18594 1.00093 0.84815 0.96200 1.84727 1.59337 1.35447 1.51298 1.21002 1.09784 0.96000 1.01113 1.20072 0.75649 0.91074 0.84886 1.92925 1.88588 1.72397 1.65726 1.92886 1.40531 1.94068 1.92566 0.89858 0.78079 0.76436 0.82295 0.74575 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.92 11.41 21.83 0.25 -38.68 15 2 C 0.04 2.06 3.44 85.25 0.29 2.35 15 3 Si 0.96 36.31 29.60 68.60 2.03 38.35 15 4 H -0.27 -10.56 7.11 99.48 0.71 -9.86 15 5 H -0.26 -8.79 7.11 99.48 0.71 -8.08 15 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 7 C -0.49 -25.16 7.25 23.36 0.17 -24.99 15 8 H 0.07 3.91 6.72 -2.91 -0.02 3.89 15 9 C 0.05 2.65 5.29 -21.08 -0.11 2.54 15 10 C 0.35 17.30 7.28 134.04 0.98 18.28 15 11 N -0.82 -35.68 7.65 -54.33 -0.42 -36.10 15 12 N -0.54 -25.73 10.37 -190.96 -1.98 -27.71 15 13 C 0.00 -0.08 11.12 84.89 0.94 0.86 15 14 C 0.05 2.22 6.70 22.54 0.15 2.37 15 15 O -0.50 -16.59 12.38 -93.32 -1.16 -17.74 15 16 C -0.27 -12.81 5.45 -19.16 -0.10 -12.92 15 17 C 0.34 14.34 5.03 71.24 0.36 14.69 15 18 F -0.21 -9.93 16.65 44.97 0.75 -9.18 15 19 F -0.22 -9.88 15.94 44.97 0.72 -9.16 15 20 H 0.29 12.73 8.30 -92.71 -0.77 11.96 15 21 H 0.39 15.04 8.95 -92.71 -0.83 14.21 15 22 H 0.40 17.27 6.02 -92.70 -0.56 16.71 15 23 H 0.16 5.78 8.06 -2.91 -0.02 5.76 15 24 H 0.40 9.18 9.06 -74.06 -0.67 8.51 15 25 H 0.14 4.70 7.08 -2.39 -0.02 4.69 15 Total: -1.00 -60.42 231.08 2.10 -58.32 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.77 Total: 38.72 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 2.68 Total: 3.19 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -2.15 Total: -102.48 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.16 Total: -17.74 kcal Atomic # 9 Polarization: -19.81 SS G_CDS: 1.47 Total: -18.34 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.35 kcal Total: -60.42 2.10 -58.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238694701.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.822 kcal (2) G-P(sol) polarization free energy of solvation -60.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds