Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86800 * 119.99916 * 2 1 4 4 H 1.48504 * 109.47172 * 274.98736 * 3 2 1 5 5 H 1.48500 * 109.47187 * 34.98781 * 3 2 1 6 6 H 1.48499 * 109.47097 * 154.98723 * 3 2 1 7 7 C 1.40005 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99821 * 186.26231 * 7 2 1 9 9 C 1.41359 * 120.00130 * 6.25470 * 7 2 1 10 10 N 1.33787 * 119.75795 * 353.53557 * 9 7 2 11 11 C 1.32031 * 121.54870 * 180.02562 * 10 9 7 12 12 N 1.38842 * 119.55036 * 179.97438 * 11 10 9 13 13 C 1.39566 * 120.90067 * 359.73540 * 11 10 9 14 14 C 1.39151 * 119.43003 * 0.51820 * 13 11 10 15 15 O 1.35771 * 120.71560 * 179.77207 * 14 13 11 16 16 C 1.39025 * 118.56405 * 359.49792 * 14 13 11 17 17 C 1.50698 * 120.46499 * 180.27681 * 16 14 13 18 18 F 1.39898 * 109.47369 * 119.99599 * 17 16 14 19 19 F 1.39895 * 109.47161 * 240.00133 * 17 16 14 20 20 H 0.97005 * 120.00004 * 359.97438 * 1 2 3 21 21 H 0.97004 * 119.99877 * 0.02562 * 12 11 10 22 22 H 0.96995 * 120.00206 * 179.97438 * 12 11 10 23 23 H 1.07998 * 120.28469 * 180.26155 * 13 11 10 24 24 H 0.96700 * 114.00076 * 269.71656 * 15 14 13 25 25 H 1.09004 * 109.47170 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4957 2.6200 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0076 -1.2125 -0.0005 8 1 3.0827 -1.2153 0.1015 9 6 1.3071 -2.4330 -0.1345 10 7 -0.0308 -2.4347 -0.1300 11 6 -0.7206 -3.5539 -0.2521 12 7 -2.1082 -3.5076 -0.2416 13 6 -0.0739 -4.7822 -0.3966 14 6 1.3169 -4.8264 -0.4010 15 8 1.9728 -6.0076 -0.5352 16 6 2.0203 -3.6343 -0.2707 17 6 3.5272 -3.6318 -0.2762 18 9 3.9884 -2.8490 -1.3400 19 9 3.9971 -3.1023 0.9304 20 1 -0.4850 0.8401 0.0004 21 1 -2.5644 -2.6570 -0.1454 22 1 -2.6214 -4.3258 -0.3312 23 1 -0.6480 -5.6911 -0.5000 24 1 2.1662 -6.4477 0.3038 25 1 3.8919 -4.6526 -0.3910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238699444.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -113.708414 kcal Electronic energy + Delta-G solvation = -16200.226422 eV Core-core repulsion = 13042.402260 eV Total energy + Delta-G solvation = -3157.824162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.81260 -45.77295 -38.79166 -36.55950 -34.29222 -32.64420 -29.77168 -29.19077 -26.47087 -23.82415 -21.73914 -20.54081 -18.37512 -17.16617 -16.44404 -16.03920 -15.87259 -15.54751 -15.21360 -14.68689 -13.83242 -13.32512 -13.00787 -12.78721 -12.73006 -12.35408 -12.20216 -11.46935 -11.41646 -11.30027 -10.88817 -10.37040 -10.20853 -9.84645 -9.44104 -9.05310 -8.00492 -7.74952 -6.85311 -6.52235 -4.69309 2.64053 2.72400 3.08144 3.14477 3.19985 3.92760 4.59383 4.66075 4.88939 5.08382 5.53315 5.69386 5.91682 6.32013 6.36131 6.59535 6.76535 7.06378 7.18804 7.30079 7.50368 8.08159 8.24858 8.30800 8.52441 8.69680 8.88344 10.05425 10.21621 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.022562 B = 0.013758 C = 0.009040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.723323 B = 2034.648208 C = 3096.730017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.407 4.407 8 H 0.094 0.906 9 C 0.319 3.681 10 N -0.535 5.535 11 C 0.438 3.562 12 N -0.863 5.863 13 C -0.391 4.391 14 C 0.223 3.777 15 O -0.510 6.510 16 C -0.400 4.400 17 C 0.343 3.657 18 F -0.210 7.210 19 F -0.214 7.214 20 H 0.273 0.727 21 H 0.396 0.604 22 H 0.392 0.608 23 H 0.101 0.899 24 H 0.383 0.617 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -4.209 1.068 4.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.437 4.437 8 H 0.112 0.888 9 C 0.194 3.806 10 N -0.257 5.257 11 C 0.192 3.808 12 N -0.407 5.407 13 C -0.417 4.417 14 C 0.173 3.827 15 O -0.319 6.319 16 C -0.406 4.406 17 C 0.289 3.711 18 F -0.192 7.192 19 F -0.196 7.196 20 H 0.085 0.915 21 H 0.225 0.775 22 H 0.219 0.781 23 H 0.120 0.880 24 H 0.237 0.763 25 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.126 -3.128 0.564 3.181 hybrid contribution 0.372 -0.238 0.347 0.561 sum 0.246 -3.366 0.910 3.496 Atomic orbital electron populations 1.70157 1.07347 1.27966 1.27011 1.26140 0.94932 1.01449 0.93320 0.86253 0.80811 0.80301 0.79274 1.19242 1.20015 1.18113 1.19892 0.95371 0.89242 1.39244 0.88785 1.17741 0.86612 0.90480 0.85770 1.68369 1.07312 1.23816 1.26241 1.18448 0.85289 0.89512 0.87591 1.42052 1.03237 1.10937 1.84469 1.20725 0.93280 0.97179 1.30512 1.17808 0.89455 0.83012 0.92463 1.84656 1.78110 1.34675 1.34451 1.20885 0.93441 0.95608 1.30641 1.19577 0.90667 0.89949 0.70900 1.92922 1.90245 1.78469 1.57535 1.92914 1.90085 1.89158 1.47405 0.91545 0.77527 0.78104 0.88038 0.76267 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.32 11.48 55.55 0.64 -17.68 15 2 C 0.07 1.75 5.49 -17.35 -0.10 1.65 15 3 Si 0.91 18.97 29.56 -169.99 -5.03 13.95 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 7 C -0.41 -11.10 8.15 -37.73 -0.31 -11.41 15 8 H 0.09 2.53 5.52 -52.49 -0.29 2.24 15 9 C 0.32 8.79 6.53 -85.03 -0.56 8.23 15 10 N -0.53 -14.44 7.91 -10.39 -0.08 -14.52 15 11 C 0.44 10.34 7.74 -155.33 -1.20 9.14 15 12 N -0.86 -16.04 9.06 31.12 0.28 -15.76 15 13 C -0.39 -8.74 9.91 -38.75 -0.38 -9.13 15 14 C 0.22 5.02 6.73 -38.95 -0.26 4.76 15 15 O -0.51 -9.40 12.40 -19.02 -0.24 -9.64 15 16 C -0.40 -9.90 5.46 -103.53 -0.56 -10.46 15 17 C 0.34 7.61 4.91 36.00 0.18 7.79 15 18 F -0.21 -4.95 16.15 2.25 0.04 -4.91 15 19 F -0.21 -4.86 15.91 2.25 0.04 -4.82 15 20 H 0.27 6.40 8.29 -40.82 -0.34 6.06 15 21 H 0.40 7.18 8.95 -40.82 -0.37 6.82 15 22 H 0.39 5.84 8.82 -40.82 -0.36 5.48 15 23 H 0.10 2.01 8.06 -52.49 -0.42 1.59 15 24 H 0.38 5.01 9.06 45.56 0.41 5.42 15 25 H 0.09 1.71 7.08 -51.93 -0.37 1.34 15 LS Contribution 234.51 15.07 3.53 3.53 Total: -1.00 -30.98 234.51 -4.54 -35.52 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.53 Total: 13.77 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -3.19 Total: 0.57 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.84 Total: -47.97 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.24 Total: -9.64 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.98 -4.54 -35.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238699444.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.188 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds