Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00266 * 2 1 4 4 H 1.48503 * 109.47226 * 274.99103 * 3 2 1 5 5 H 1.48503 * 109.46724 * 34.98864 * 3 2 1 6 6 H 1.48502 * 109.47021 * 154.98827 * 3 2 1 7 7 C 1.40007 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99576 * 186.18820 * 7 2 1 9 9 C 1.40760 * 120.00199 * 6.17925 * 7 2 1 10 10 N 1.33746 * 119.84324 * 353.19765 * 9 7 2 11 11 C 1.31240 * 121.63589 * 179.97438 * 10 9 7 12 12 C 1.50705 * 119.43171 * 179.97438 * 11 10 9 13 13 F 1.39898 * 109.46781 * 119.99757 * 12 11 10 14 14 F 1.39901 * 109.46806 * 239.99674 * 12 11 10 15 15 C 1.39711 * 121.13312 * 359.97438 * 11 10 9 16 16 O 1.35708 * 120.22485 * 180.02562 * 15 11 10 17 17 C 1.39089 * 119.55503 * 359.74897 * 15 11 10 18 18 C 1.38935 * 118.49047 * 0.49940 * 17 15 11 19 19 N 1.38629 * 120.56798 * 179.78478 * 18 17 15 20 20 H 0.97000 * 119.99426 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46995 * 0.02562 * 12 11 10 22 22 H 0.96699 * 113.99994 * 89.99636 * 16 15 11 23 23 H 1.08002 * 120.75428 * 180.24869 * 17 15 11 24 24 H 0.97003 * 120.00197 * 179.71666 * 19 18 17 25 25 H 0.97000 * 120.00097 * 359.43771 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3844 2.1073 -1.3948 5 1 1.4964 2.6199 0.8029 6 1 3.5886 1.4119 0.5920 7 6 2.0082 -1.2125 -0.0005 8 1 3.0834 -1.2153 0.1003 9 6 1.3105 -2.4279 -0.1323 10 7 -0.0269 -2.4324 -0.1197 11 6 -0.7127 -3.5448 -0.2404 12 6 -2.2187 -3.4923 -0.2190 13 9 -2.7200 -4.0006 -1.4221 14 9 -2.6970 -4.2611 0.8475 15 6 -0.0707 -4.7768 -0.3882 16 8 -0.7981 -5.9157 -0.5120 17 6 1.3191 -4.8276 -0.4135 18 6 2.0281 -3.6404 -0.2790 19 7 3.4144 -3.6416 -0.2937 20 1 -0.4849 0.8401 0.0004 21 1 -2.5445 -2.4593 -0.0977 22 1 -1.0176 -6.1450 -1.4254 23 1 1.8353 -5.7689 -0.5309 24 1 3.9011 -2.8074 -0.2033 25 1 3.8976 -4.4771 -0.3903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238699742.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -135.277486 kcal Electronic energy + Delta-G solvation = -16042.989892 eV Core-core repulsion = 12884.230425 eV Total energy + Delta-G solvation = -3158.759467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.80672 -47.81149 -40.60010 -38.00120 -35.68159 -35.23877 -31.41251 -30.81905 -28.08880 -25.84804 -23.74037 -22.35488 -19.67548 -19.10315 -18.77643 -18.08190 -17.68881 -17.29508 -16.84143 -16.30464 -15.54254 -15.20918 -14.88871 -14.68997 -14.23390 -14.14910 -14.01426 -13.59260 -12.85650 -12.80246 -12.51248 -12.25762 -11.93481 -11.80391 -11.51531 -11.14255 -9.77274 -9.64216 -8.60794 -8.32072 -6.25891 0.62366 1.00243 1.46626 1.52979 1.59456 2.25583 2.74495 2.86992 3.30141 3.45257 3.65590 3.78652 3.95203 4.35809 4.42394 4.72521 4.98499 5.11159 5.28973 5.53133 5.76575 6.16066 6.47517 6.80271 6.93091 7.08689 7.31701 8.01016 8.47701 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.010330 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.573224 B = 2709.934284 C = 3500.687006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.454 4.454 8 H 0.102 0.898 9 C 0.184 3.816 10 N -0.465 5.465 11 C -0.024 4.024 12 C 0.339 3.661 13 F -0.207 7.207 14 F -0.208 7.208 15 C -0.014 4.014 16 O -0.498 6.498 17 C -0.196 4.196 18 C 0.115 3.885 19 N -0.853 5.853 20 H 0.279 0.721 21 H 0.125 0.875 22 H 0.381 0.619 23 H 0.134 0.866 24 H 0.402 0.598 25 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -1.752 -1.996 4.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.487 4.487 8 H 0.120 0.880 9 C 0.052 3.948 10 N -0.181 5.181 11 C -0.165 4.165 12 C 0.284 3.716 13 F -0.188 7.188 14 F -0.190 7.190 15 C -0.064 4.064 16 O -0.306 6.306 17 C -0.225 4.225 18 C 0.006 3.994 19 N -0.396 5.396 20 H 0.089 0.911 21 H 0.143 0.857 22 H 0.236 0.764 23 H 0.152 0.848 24 H 0.233 0.767 25 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.374 -0.927 -1.283 2.853 hybrid contribution 0.711 -0.404 -0.637 1.036 sum 3.085 -1.331 -1.920 3.869 Atomic orbital electron populations 1.70218 1.08929 1.29146 1.30040 1.26898 0.95659 1.04384 0.92860 0.85110 0.79227 0.75958 0.78922 1.19294 1.20038 1.17343 1.19616 0.95353 0.89799 1.43897 0.88048 1.18762 0.87825 0.92297 0.95960 1.68208 1.07653 1.24594 1.17639 1.21882 0.95375 0.90711 1.08528 1.19954 0.88477 0.92481 0.70640 1.92891 1.88668 1.89950 1.47336 1.92922 1.89394 1.79337 1.57329 1.18673 0.89975 0.85344 1.12433 1.84747 1.73263 1.40341 1.32233 1.20789 0.92843 0.97007 1.11890 1.18887 0.86299 0.93566 1.00666 1.41790 1.01701 1.11834 1.84302 0.91054 0.85735 0.76445 0.84794 0.76749 0.77086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -38.90 11.48 21.84 0.25 -38.65 15 2 C 0.02 1.10 5.49 85.27 0.47 1.57 15 3 Si 0.99 35.39 29.56 68.60 2.03 37.42 15 4 H -0.27 -9.43 7.11 99.48 0.71 -8.73 15 5 H -0.28 -9.75 7.11 99.48 0.71 -9.05 15 6 H -0.25 -8.37 7.11 99.48 0.71 -7.67 15 7 C -0.45 -22.12 8.85 23.32 0.21 -21.92 15 8 H 0.10 4.35 6.14 -2.91 -0.02 4.33 15 9 C 0.18 9.49 6.56 40.31 0.26 9.75 15 10 N -0.46 -25.08 7.75 -176.23 -1.36 -26.44 15 11 C -0.02 -1.18 6.30 43.00 0.27 -0.91 15 12 C 0.34 14.95 5.21 71.24 0.37 15.32 15 13 F -0.21 -8.55 16.95 44.97 0.76 -7.78 15 14 F -0.21 -9.27 16.95 44.97 0.76 -8.51 15 15 C -0.01 -0.62 6.61 22.83 0.15 -0.47 15 16 O -0.50 -20.43 12.38 -90.29 -1.12 -21.55 15 17 C -0.20 -8.45 9.96 22.64 0.23 -8.23 15 18 C 0.12 5.10 6.80 39.08 0.27 5.37 15 19 N -0.85 -28.87 8.97 -50.27 -0.45 -29.32 15 20 H 0.28 12.96 8.30 -92.71 -0.77 12.19 15 21 H 0.13 5.30 8.10 -2.39 -0.02 5.28 15 22 H 0.38 12.34 9.06 -74.06 -0.67 11.67 15 23 H 0.13 4.92 8.06 -2.91 -0.02 4.90 15 24 H 0.40 12.84 6.84 -92.71 -0.63 12.21 15 25 H 0.40 10.74 8.84 -92.71 -0.82 9.92 15 Total: -1.00 -61.56 236.50 2.26 -59.30 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.83 Total: 35.06 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 2.22 Total: 0.48 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -1.57 Total: -94.42 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.12 Total: -21.55 kcal Atomic # 9 Polarization: -17.82 SS G_CDS: 1.52 Total: -16.29 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -61.56 2.26 -59.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238699742.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.979 kcal (2) G-P(sol) polarization free energy of solvation -61.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds