Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30945 * 1 3 3 Si 1.86795 * 120.00266 * 2 1 4 4 H 1.48504 * 109.46988 * 275.28355 * 3 2 1 5 5 H 1.48502 * 109.46973 * 35.28325 * 3 2 1 6 6 H 1.48496 * 109.47018 * 155.28371 * 3 2 1 7 7 C 1.39864 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00304 * 27.15592 * 7 2 1 9 9 C 1.41058 * 119.99282 * 207.15400 * 7 2 1 10 10 C 1.41969 * 120.62980 * 39.18997 * 9 7 2 11 11 O 1.35564 * 120.91292 * 359.95286 * 10 9 7 12 12 C 1.38305 * 118.16363 * 180.22511 * 10 9 7 13 13 C 1.39288 * 119.30099 * 359.48371 * 12 10 9 14 14 N 1.38469 * 119.38604 * 180.27270 * 13 12 10 15 15 N 1.32849 * 121.22360 * 0.53485 * 13 12 10 16 16 C 1.31469 * 122.03117 * 359.73910 * 15 13 12 17 17 C 1.50693 * 119.73543 * 180.02562 * 16 15 13 18 18 F 1.39903 * 109.47008 * 14.82204 * 17 16 15 19 19 F 1.39902 * 109.47243 * 134.82550 * 17 16 15 20 20 H 0.96996 * 119.99627 * 359.97438 * 1 2 3 21 21 H 0.96704 * 113.99697 * 92.18390 * 11 10 9 22 22 H 1.07996 * 120.34586 * 179.74625 * 12 10 9 23 23 H 0.97007 * 119.99801 * 180.25700 * 14 13 12 24 24 H 0.96998 * 120.00080 * 0.25564 * 14 13 12 25 25 H 1.09004 * 109.46999 * 254.82437 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.3794 2.1108 -1.3942 5 1 1.5012 2.6178 0.8087 6 1 3.5924 1.4103 0.5854 7 6 2.0086 -1.2113 -0.0005 8 1 1.5579 -2.0949 -0.4278 9 6 3.3026 -1.2789 0.5570 10 6 3.6158 -0.5693 1.7461 11 8 2.6817 0.1885 2.3714 12 6 4.9017 -0.6679 2.2456 13 6 5.8332 -1.4602 1.5787 14 7 7.1195 -1.5647 2.0804 15 7 5.5118 -2.1133 0.4674 16 6 4.3067 -2.0509 -0.0543 17 6 3.9984 -2.8135 -1.3169 18 9 5.0066 -3.7547 -1.5511 19 9 2.7708 -3.4700 -1.1773 20 1 -0.4849 0.8400 0.0004 21 1 2.1888 -0.2819 3.0576 22 1 5.1794 -0.1396 3.1456 23 1 7.7764 -2.1110 1.6210 24 1 7.3638 -1.0916 2.8912 25 1 3.9463 -2.1203 -2.1565 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238700073.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -106.899172 kcal Electronic energy + Delta-G solvation = -16288.396553 eV Core-core repulsion = 13130.867662 eV Total energy + Delta-G solvation = -3157.528891 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.99713 -46.01847 -39.18724 -36.51755 -34.21262 -33.08998 -30.29912 -29.62700 -26.52300 -23.98220 -21.54685 -21.06515 -17.92492 -17.63349 -16.83663 -16.54350 -16.15536 -15.48179 -15.02245 -14.75277 -14.19606 -13.61661 -13.47874 -13.05138 -12.83755 -12.68691 -12.33328 -11.89196 -11.58417 -11.08974 -10.81105 -10.54973 -10.08520 -9.71588 -9.41071 -9.02188 -8.53683 -8.25547 -7.06919 -6.93365 -4.43535 2.08829 2.53388 3.20106 3.23691 3.39890 4.13049 4.29427 4.44119 4.77906 4.98937 5.16688 5.28073 5.79833 5.96036 6.01491 6.31233 6.58025 6.82823 6.84643 7.30087 7.40303 8.05228 8.17942 8.34537 8.42112 8.61867 8.76265 9.29216 10.02747 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.014810 C = 0.010173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.902592 B = 1890.209058 C = 2751.600819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.107 3.893 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.238 1.238 7 C -0.463 4.463 8 H 0.113 0.887 9 C 0.015 3.985 10 C 0.082 3.918 11 O -0.483 6.483 12 C -0.206 4.206 13 C 0.299 3.701 14 N -0.872 5.872 15 N -0.492 5.492 16 C -0.022 4.022 17 C 0.349 3.651 18 F -0.208 7.208 19 F -0.196 7.196 20 H 0.284 0.716 21 H 0.371 0.629 22 H 0.112 0.888 23 H 0.391 0.609 24 H 0.394 0.606 25 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 0.406 2.197 6.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.115 4.115 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.491 4.491 8 H 0.131 0.869 9 C 0.009 3.991 10 C 0.029 3.971 11 O -0.292 6.292 12 C -0.231 4.231 13 C 0.064 3.936 14 N -0.421 5.421 15 N -0.208 5.208 16 C -0.162 4.162 17 C 0.295 3.705 18 F -0.190 7.190 19 F -0.177 7.177 20 H 0.095 0.905 21 H 0.227 0.773 22 H 0.130 0.870 23 H 0.219 0.781 24 H 0.222 0.778 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.370 0.403 1.360 6.526 hybrid contribution -0.299 0.849 1.045 1.380 sum 6.071 1.252 2.405 6.649 Atomic orbital electron populations 1.69835 1.08459 1.30395 1.32970 1.26095 0.94336 1.01628 0.89426 0.85964 0.83161 0.79786 0.76859 1.21670 1.20702 1.16246 1.19549 0.96830 0.98298 1.34424 0.86899 1.18353 0.94144 0.93793 0.92849 1.18254 0.87840 0.98282 0.92711 1.84668 1.51831 1.38387 1.54304 1.21247 0.94518 1.04395 1.02899 1.17357 0.86607 0.97079 0.92537 1.41532 1.09691 1.59042 1.31786 1.66084 1.20925 1.22736 1.11101 1.20998 0.89044 1.07698 0.98443 1.19700 0.71112 0.83276 0.96445 1.92912 1.61651 1.68731 1.95662 1.92923 1.44567 1.83126 1.97129 0.90525 0.77343 0.87032 0.78110 0.77812 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.43 13.93 55.54 0.77 -19.66 15 2 C 0.11 2.71 4.74 -17.32 -0.08 2.63 15 3 Si 0.92 21.11 25.38 -169.99 -4.31 16.80 15 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.24 -5.74 5.46 56.52 0.31 -5.44 15 7 C -0.46 -11.96 8.42 -37.91 -0.32 -12.28 15 8 H 0.11 3.09 5.83 -52.49 -0.31 2.78 15 9 C 0.02 0.37 4.73 -106.50 -0.50 -0.13 15 10 C 0.08 1.87 4.61 -38.13 -0.18 1.70 15 11 O -0.48 -10.21 9.27 -18.39 -0.17 -10.38 15 12 C -0.21 -4.27 9.85 -39.17 -0.39 -4.66 15 13 C 0.30 6.23 7.73 -155.10 -1.20 5.03 15 14 N -0.87 -13.87 9.04 31.13 0.28 -13.59 15 15 N -0.49 -11.29 9.80 -8.14 -0.08 -11.37 15 16 C -0.02 -0.52 6.64 -81.85 -0.54 -1.07 15 17 C 0.35 7.49 5.25 36.00 0.19 7.68 15 18 F -0.21 -4.42 16.92 2.25 0.04 -4.38 15 19 F -0.20 -4.44 14.57 2.25 0.03 -4.41 15 20 H 0.28 6.70 8.30 -40.82 -0.34 6.36 15 21 H 0.37 6.38 9.06 45.56 0.41 6.79 15 22 H 0.11 2.00 8.06 -52.49 -0.42 1.57 15 23 H 0.39 5.74 8.95 -40.82 -0.37 5.38 15 24 H 0.39 5.04 8.81 -40.82 -0.36 4.68 15 25 H 0.11 2.05 8.14 -51.93 -0.42 1.63 15 LS Contribution 227.70 15.07 3.43 3.43 Total: -1.00 -29.33 227.70 -3.72 -33.05 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.69 Total: 11.61 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.02 Total: -1.11 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.98 Total: -44.61 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.17 Total: -10.38 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.31 Total: 16.80 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.33 -3.72 -33.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700073.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.854 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds