Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30945 * 1 3 3 Si 1.86795 * 120.00266 * 2 1 4 4 H 1.48504 * 109.46988 * 275.28355 * 3 2 1 5 5 H 1.48502 * 109.46973 * 35.28325 * 3 2 1 6 6 H 1.48496 * 109.47018 * 155.28371 * 3 2 1 7 7 C 1.39864 * 119.99391 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00304 * 27.15592 * 7 2 1 9 9 C 1.41058 * 119.99282 * 207.15400 * 7 2 1 10 10 C 1.41969 * 120.62980 * 39.18997 * 9 7 2 11 11 O 1.35564 * 120.91292 * 359.95286 * 10 9 7 12 12 C 1.38305 * 118.16363 * 180.22511 * 10 9 7 13 13 C 1.39288 * 119.30099 * 359.48371 * 12 10 9 14 14 N 1.38469 * 119.38604 * 180.27270 * 13 12 10 15 15 N 1.32849 * 121.22360 * 0.53485 * 13 12 10 16 16 C 1.31469 * 122.03117 * 359.73910 * 15 13 12 17 17 C 1.50693 * 119.73543 * 180.02562 * 16 15 13 18 18 F 1.39903 * 109.47008 * 14.82204 * 17 16 15 19 19 F 1.39902 * 109.47243 * 134.82550 * 17 16 15 20 20 H 0.96996 * 119.99627 * 359.97438 * 1 2 3 21 21 H 0.96704 * 113.99697 * 92.18390 * 11 10 9 22 22 H 1.07996 * 120.34586 * 179.74625 * 12 10 9 23 23 H 0.97007 * 119.99801 * 180.25700 * 14 13 12 24 24 H 0.96998 * 120.00080 * 0.25564 * 14 13 12 25 25 H 1.09004 * 109.46999 * 254.82437 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.3794 2.1108 -1.3942 5 1 1.5012 2.6178 0.8087 6 1 3.5924 1.4103 0.5854 7 6 2.0086 -1.2113 -0.0005 8 1 1.5579 -2.0949 -0.4278 9 6 3.3026 -1.2789 0.5570 10 6 3.6158 -0.5693 1.7461 11 8 2.6817 0.1885 2.3714 12 6 4.9017 -0.6679 2.2456 13 6 5.8332 -1.4602 1.5787 14 7 7.1195 -1.5647 2.0804 15 7 5.5118 -2.1133 0.4674 16 6 4.3067 -2.0509 -0.0543 17 6 3.9984 -2.8135 -1.3169 18 9 5.0066 -3.7547 -1.5511 19 9 2.7708 -3.4700 -1.1773 20 1 -0.4849 0.8400 0.0004 21 1 2.1888 -0.2819 3.0576 22 1 5.1794 -0.1396 3.1456 23 1 7.7764 -2.1110 1.6210 24 1 7.3638 -1.0916 2.8912 25 1 3.9463 -2.1203 -2.1565 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238700073.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -129.565358 kcal Electronic energy + Delta-G solvation = -16289.379433 eV Core-core repulsion = 13130.867662 eV Total energy + Delta-G solvation = -3158.511771 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.71506 -47.73890 -40.90822 -38.19467 -35.91179 -34.81178 -32.05614 -31.26794 -28.26861 -25.72783 -23.27987 -22.77532 -19.72736 -19.30423 -18.51700 -18.23017 -17.82179 -17.16711 -16.79448 -16.35308 -15.82331 -15.32126 -15.16154 -14.84447 -14.56776 -14.39386 -14.09089 -13.61386 -13.35118 -12.86013 -12.62607 -12.25451 -11.88340 -11.39631 -11.16698 -10.77271 -10.27651 -9.98665 -8.80408 -8.70002 -6.30100 0.35066 0.76830 1.40082 1.41320 1.56177 2.29252 2.62557 2.77286 3.14607 3.26445 3.52012 3.56882 4.18024 4.28616 4.41500 4.59965 4.89943 5.11310 5.15370 5.62577 5.64305 6.30696 6.49117 6.72533 6.82920 6.92218 7.05685 7.69012 8.23453 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.014810 C = 0.010173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.902592 B = 1890.209058 C = 2751.600819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.085 3.915 3 Si 0.962 3.038 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.491 4.491 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.087 3.913 11 O -0.489 6.489 12 C -0.212 4.212 13 C 0.314 3.686 14 N -0.850 5.850 15 N -0.516 5.516 16 C -0.031 4.031 17 C 0.346 3.654 18 F -0.207 7.207 19 F -0.206 7.206 20 H 0.290 0.710 21 H 0.391 0.609 22 H 0.147 0.853 23 H 0.401 0.599 24 H 0.413 0.587 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 1.106 3.319 8.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.133 4.133 3 Si 0.788 3.212 4 H -0.216 1.216 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.520 4.520 8 H 0.103 0.897 9 C -0.014 4.014 10 C 0.034 3.966 11 O -0.300 6.300 12 C -0.237 4.237 13 C 0.076 3.924 14 N -0.400 5.400 15 N -0.234 5.234 16 C -0.169 4.169 17 C 0.292 3.708 18 F -0.188 7.188 19 F -0.188 7.188 20 H 0.101 0.899 21 H 0.249 0.751 22 H 0.164 0.836 23 H 0.230 0.770 24 H 0.244 0.756 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.397 1.094 2.506 8.830 hybrid contribution -0.665 0.549 0.838 1.203 sum 7.731 1.643 3.344 8.582 Atomic orbital electron populations 1.69850 1.09252 1.31160 1.35543 1.26476 0.94600 1.03073 0.89171 0.85294 0.81436 0.77734 0.76691 1.21553 1.20179 1.17591 1.19347 0.97965 0.97870 1.36797 0.89744 1.18507 0.93937 0.95177 0.93800 1.18492 0.88941 0.96958 0.92227 1.84570 1.51942 1.38611 1.54912 1.21543 0.93566 1.04525 1.04032 1.17833 0.88115 0.95090 0.91315 1.41517 1.07943 1.58418 1.32098 1.66210 1.20569 1.24264 1.12359 1.21297 0.89282 1.07321 0.99003 1.19927 0.70632 0.83444 0.96820 1.92905 1.61539 1.68786 1.95612 1.92904 1.45296 1.83350 1.97204 0.89920 0.75125 0.83578 0.76966 0.75570 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.62 13.93 21.82 0.30 -43.32 15 2 C 0.08 4.31 4.74 85.22 0.40 4.72 15 3 Si 0.96 43.09 25.38 68.60 1.74 44.83 15 4 H -0.29 -12.63 7.11 99.48 0.71 -11.93 15 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 6 H -0.25 -11.60 5.46 99.48 0.54 -11.06 15 7 C -0.49 -25.75 8.42 23.36 0.20 -25.55 15 8 H 0.08 4.81 5.83 -2.91 -0.02 4.79 15 9 C -0.01 -0.37 4.73 -21.08 -0.10 -0.47 15 10 C 0.09 3.80 4.61 23.21 0.11 3.90 15 11 O -0.49 -19.72 9.27 -88.71 -0.82 -20.55 15 12 C -0.21 -8.05 9.85 22.54 0.22 -7.83 15 13 C 0.31 12.00 7.73 133.15 1.03 13.03 15 14 N -0.85 -23.32 9.04 -55.43 -0.50 -23.82 15 15 N -0.52 -22.54 9.80 -179.66 -1.76 -24.30 15 16 C -0.03 -1.45 6.64 43.20 0.29 -1.16 15 17 C 0.35 14.71 5.25 71.23 0.37 15.08 15 18 F -0.21 -8.59 16.92 44.97 0.76 -7.83 15 19 F -0.21 -9.50 14.57 44.97 0.66 -8.84 15 20 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 21 H 0.39 12.70 9.06 -74.05 -0.67 12.02 15 22 H 0.15 4.50 8.06 -2.91 -0.02 4.47 15 23 H 0.40 10.10 8.95 -92.70 -0.83 9.27 15 24 H 0.41 8.48 8.81 -92.71 -0.82 7.66 15 25 H 0.14 4.99 8.14 -2.38 -0.02 4.97 15 Total: -1.00 -61.76 227.70 1.71 -60.05 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -1.19 Total: 22.06 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 2.52 Total: 1.72 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -1.96 Total: -91.45 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.82 Total: -20.55 kcal Atomic # 9 Polarization: -18.09 SS G_CDS: 1.42 Total: -16.67 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.74 Total: 44.83 kcal Total: -61.76 1.71 -60.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700073.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.511 kcal (2) G-P(sol) polarization free energy of solvation -61.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds