Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 120.00246 * 2 1 4 4 H 1.48502 * 109.47485 * 274.99152 * 3 2 1 5 5 H 1.48498 * 109.47001 * 34.98962 * 3 2 1 6 6 H 1.48498 * 109.47088 * 154.98761 * 3 2 1 7 7 C 1.39984 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99819 * 186.28716 * 7 2 1 9 9 C 1.40806 * 120.00387 * 6.29027 * 7 2 1 10 10 N 1.33759 * 119.78792 * 353.60648 * 9 7 2 11 11 C 1.31199 * 121.63202 * 179.70145 * 10 9 7 12 12 C 1.50708 * 119.48988 * 180.28520 * 11 10 9 13 13 F 1.39895 * 109.46993 * 120.25013 * 12 11 10 14 14 F 1.39906 * 109.47069 * 240.25432 * 12 11 10 15 15 C 1.39919 * 121.02497 * 0.54594 * 11 10 9 16 16 N 1.38933 * 120.26402 * 179.74490 * 15 11 10 17 17 C 1.39483 * 119.47076 * 359.46396 * 15 11 10 18 18 C 1.38489 * 118.49456 * 0.25463 * 17 15 11 19 19 O 1.35614 * 120.52336 * 179.97438 * 18 17 15 20 20 H 0.97003 * 119.99806 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46582 * 0.25422 * 12 11 10 22 22 H 0.97000 * 119.99920 * 179.71989 * 16 15 11 23 23 H 0.97006 * 120.00118 * 359.44297 * 16 15 11 24 24 H 1.08007 * 120.75380 * 180.27601 * 17 15 11 25 25 H 0.96696 * 114.00542 * 90.00225 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3844 2.1073 -1.3948 5 1 1.4965 2.6199 0.8028 6 1 3.5886 1.4119 0.5920 7 6 2.0081 -1.2123 -0.0005 8 1 3.0832 -1.2152 0.1019 9 6 1.3105 -2.4280 -0.1347 10 7 -0.0271 -2.4303 -0.1325 11 6 -0.7135 -3.5411 -0.2608 12 6 -2.2196 -3.4870 -0.2582 13 9 -2.7067 -4.0009 -1.4648 14 9 -2.7118 -4.2498 0.8063 15 6 -0.0690 -4.7757 -0.3946 16 7 -0.8115 -5.9428 -0.5242 17 6 1.3250 -4.8249 -0.4027 18 6 2.0286 -3.6393 -0.2715 19 8 3.3848 -3.6394 -0.2736 20 1 -0.4850 0.8401 0.0004 21 1 -2.5458 -2.4530 -0.1457 22 1 -0.3607 -6.7963 -0.6207 23 1 -1.7808 -5.9047 -0.5140 24 1 1.8438 -5.7661 -0.5092 25 1 3.7768 -3.5414 -1.1520 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238700086.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -135.775739 kcal Electronic energy + Delta-G solvation = -16043.399223 eV Core-core repulsion = 12884.618149 eV Total energy + Delta-G solvation = -3158.781073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.98246 -47.91922 -40.63492 -37.84954 -36.20588 -34.60375 -31.92656 -30.61848 -28.03630 -25.89709 -23.66289 -22.54423 -19.70409 -19.05572 -18.77152 -18.17754 -17.89066 -17.16965 -16.73755 -16.38297 -15.73804 -15.24673 -14.94660 -14.63346 -14.34079 -14.18071 -13.96525 -13.61019 -13.03399 -12.95995 -12.51456 -12.19082 -12.02605 -11.93788 -11.38301 -10.86955 -9.90108 -9.72218 -8.68483 -8.30387 -6.21538 0.49747 1.02200 1.45290 1.54128 1.58670 2.28097 2.71398 2.75555 3.22302 3.34019 3.57382 3.80645 3.89978 4.28119 4.39940 4.70116 4.90453 5.12140 5.36587 5.37509 5.76237 6.27113 6.55173 6.73940 6.92273 7.14036 7.24995 7.94806 8.50081 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.010366 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.466613 B = 2700.409897 C = 3498.753114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.025 3.975 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.462 4.462 8 H 0.089 0.911 9 C 0.174 3.826 10 N -0.444 5.444 11 C -0.027 4.027 12 C 0.335 3.665 13 F -0.202 7.202 14 F -0.203 7.203 15 C 0.091 3.909 16 N -0.869 5.869 17 C -0.159 4.159 18 C -0.006 4.006 19 O -0.494 6.494 20 H 0.278 0.722 21 H 0.129 0.871 22 H 0.402 0.598 23 H 0.393 0.607 24 H 0.140 0.860 25 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 -4.304 -2.330 5.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.495 4.495 8 H 0.107 0.893 9 C 0.045 3.955 10 N -0.159 5.159 11 C -0.174 4.174 12 C 0.281 3.719 13 F -0.184 7.184 14 F -0.185 7.185 15 C -0.016 4.016 16 N -0.414 5.414 17 C -0.188 4.188 18 C -0.057 4.057 19 O -0.303 6.303 20 H 0.089 0.911 21 H 0.146 0.854 22 H 0.231 0.769 23 H 0.222 0.778 24 H 0.158 0.842 25 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.795 -3.433 -1.621 4.200 hybrid contribution 0.537 -0.533 -0.604 0.968 sum -1.258 -3.966 -2.225 4.718 Atomic orbital electron populations 1.70188 1.08650 1.28996 1.31228 1.26856 0.95702 1.04199 0.92729 0.85143 0.78994 0.76123 0.79108 1.18902 1.19547 1.18297 1.19584 0.95251 0.90085 1.44543 0.89283 1.19093 0.87686 0.93277 0.95479 1.68176 1.07798 1.25157 1.14742 1.21451 0.95399 0.90128 1.10389 1.19951 0.88041 0.93309 0.70649 1.92930 1.89097 1.89485 1.46865 1.92932 1.88922 1.79261 1.57348 1.18106 0.91189 0.87720 1.04564 1.41786 1.07934 1.05325 1.86362 1.20984 0.91873 0.98319 1.07637 1.19379 0.83505 0.92637 1.10161 1.84632 1.15780 1.95452 1.34395 0.91118 0.85372 0.76914 0.77794 0.84198 0.75893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -40.31 11.48 21.83 0.25 -40.06 15 2 C 0.03 1.27 5.49 85.27 0.47 1.74 15 3 Si 0.99 38.01 29.56 68.60 2.03 40.03 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 5 H -0.27 -10.04 7.11 99.48 0.71 -9.34 15 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 7 C -0.46 -24.74 8.92 23.32 0.21 -24.53 15 8 H 0.09 4.58 7.33 -2.91 -0.02 4.55 15 9 C 0.17 9.44 6.55 40.28 0.26 9.70 15 10 N -0.44 -23.94 7.74 -176.19 -1.36 -25.30 15 11 C -0.03 -1.27 6.31 43.06 0.27 -1.00 15 12 C 0.33 13.39 5.03 71.24 0.36 13.75 15 13 F -0.20 -7.58 16.26 44.97 0.73 -6.85 15 14 F -0.20 -7.69 16.24 44.97 0.73 -6.96 15 15 C 0.09 3.85 6.68 38.72 0.26 4.10 15 16 N -0.87 -28.76 8.80 -50.85 -0.45 -29.20 15 17 C -0.16 -6.72 9.96 22.63 0.23 -6.50 15 18 C -0.01 -0.30 6.75 23.13 0.16 -0.15 15 19 O -0.49 -20.76 12.64 -89.26 -1.13 -21.89 15 20 H 0.28 13.22 8.30 -92.71 -0.77 12.45 15 21 H 0.13 5.05 8.10 -2.38 -0.02 5.03 15 22 H 0.40 10.73 8.84 -92.71 -0.82 9.91 15 23 H 0.39 12.57 6.23 -92.70 -0.58 11.99 15 24 H 0.14 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.39 12.40 9.06 -74.06 -0.67 11.73 15 Total: -1.00 -62.24 235.64 2.23 -60.01 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.78 Total: 33.10 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 2.21 Total: -2.88 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -1.56 Total: -94.56 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -1.13 Total: -21.89 kcal Atomic # 9 Polarization: -15.27 SS G_CDS: 1.46 Total: -13.81 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.03 kcal Total: -62.24 2.23 -60.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700086.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.764 kcal (2) G-P(sol) polarization free energy of solvation -62.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds