Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38218 * 120.01553 * 2 1 4 4 C 1.38225 * 120.02208 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96960 * 180.02562 * 4 3 2 6 6 F 1.39897 * 109.47316 * 30.00117 * 5 4 3 7 7 F 1.39901 * 109.46956 * 150.00174 * 5 4 3 8 8 C 1.50698 * 109.47249 * 269.99909 * 5 4 3 9 9 H 1.07997 * 119.99899 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00208 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99980 * 0.02562 * 10 8 5 12 12 Si 1.86797 * 120.00231 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.47157 * 60.00245 * 12 10 8 14 14 H 1.48499 * 109.47499 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47370 * 300.00267 * 12 10 8 16 16 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 17 17 C 1.38176 * 120.02823 * 359.97438 * 16 4 3 18 18 C 1.38445 * 120.00815 * 179.97438 * 2 1 3 19 19 F 1.35093 * 120.02545 * 359.74916 * 18 2 1 20 20 H 1.08996 * 109.47218 * 270.02360 * 1 2 3 21 21 H 1.09004 * 109.46567 * 30.01967 * 1 2 3 22 22 H 1.08997 * 109.47335 * 150.01519 * 1 2 3 23 23 H 1.07992 * 119.98884 * 359.97438 * 3 2 1 24 24 H 0.96999 * 120.00019 * 179.97438 * 11 10 8 25 25 H 1.08000 * 119.98535 * 180.02562 * 16 4 3 26 26 H 1.08000 * 120.01901 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.3334 2.5026 0.0011 6 9 3.5765 3.4769 0.6605 7 9 5.5556 2.3359 0.6610 8 6 4.5848 2.9381 -1.4195 9 1 4.2343 2.3305 -2.2406 10 6 5.2624 4.1122 -1.6709 11 7 5.6897 4.8519 -0.6710 12 14 5.5747 4.6517 -3.4318 13 1 4.2776 4.8290 -4.1327 14 1 6.3174 5.9377 -3.4313 15 1 6.3780 3.6172 -4.1314 16 6 4.2733 0.0003 0.0016 17 6 3.5843 -1.1974 0.0027 18 6 2.1994 -1.1989 0.0005 19 9 1.5246 -2.3692 0.0062 20 1 -0.3633 0.0004 1.0276 21 1 -0.3632 0.8899 -0.5142 22 1 -0.3634 -0.8901 -0.5136 23 1 1.6585 2.1321 -0.0004 24 1 6.1667 5.6778 -0.8479 25 1 5.3533 0.0017 0.0024 26 1 4.1254 -2.1320 0.0039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259031956.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = -136.003013 kcal Electronic energy + Delta-G solvation = -15830.310382 eV Core-core repulsion = 12651.599492 eV Total energy + Delta-G solvation = -3178.710890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.62694 -46.99932 -45.03571 -38.63558 -33.05205 -32.54262 -30.85560 -27.06168 -26.49030 -23.41023 -21.98980 -20.10403 -17.31207 -17.20688 -16.37097 -16.04136 -15.40026 -14.93014 -14.69618 -14.00539 -13.92284 -13.20026 -13.00294 -12.91430 -12.53702 -11.94672 -11.89802 -11.79407 -11.71013 -11.42956 -11.08282 -11.03032 -10.60506 -10.51684 -10.15785 -9.10542 -8.88845 -8.53035 -8.10573 -6.33027 -4.61567 1.51324 1.61535 3.19636 3.23359 3.26103 3.94597 4.19628 4.56925 4.93563 4.98932 5.02070 5.10432 5.54047 5.67700 5.73109 5.83849 5.97889 6.25718 6.30053 6.47830 6.52896 6.72427 6.76209 7.24515 7.42318 7.43054 7.58713 8.48728 9.19782 10.71379 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.036231 B = 0.008051 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.623052 B = 3477.110189 C = 3546.894855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.127 4.127 3 C -0.068 4.068 4 C -0.107 4.107 5 C 0.440 3.560 6 F -0.218 7.218 7 F -0.217 7.217 8 C -0.589 4.589 9 H 0.080 0.920 10 C 0.086 3.914 11 N -0.853 5.853 12 Si 0.913 3.087 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.270 1.270 16 C -0.073 4.073 17 C -0.155 4.155 18 C 0.083 3.917 19 F -0.146 7.146 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.137 0.863 24 H 0.272 0.728 25 H 0.138 0.862 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 -8.065 0.306 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.086 4.086 4 C -0.108 4.108 5 C 0.404 3.596 6 F -0.199 7.199 7 F -0.199 7.199 8 C -0.626 4.626 9 H 0.098 0.902 10 C -0.124 4.124 11 N -0.485 5.485 12 Si 0.738 3.262 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.091 4.091 17 C -0.174 4.174 18 C 0.063 3.937 19 F -0.125 7.125 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.082 0.918 25 H 0.155 0.845 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.819 -7.901 0.420 9.821 hybrid contribution 0.212 0.181 -0.756 0.806 sum -5.607 -7.719 -0.336 9.547 Atomic orbital electron populations 1.20667 0.90469 1.02984 1.02410 1.19832 0.96721 0.91800 1.04474 1.20772 0.93375 0.97285 0.97185 1.21014 0.94553 0.96498 0.98770 1.16964 0.73984 0.80141 0.88545 1.92880 1.76601 1.66430 1.83958 1.92882 1.47492 1.95547 1.83937 1.21418 1.42308 1.09374 0.89496 0.90223 1.25131 0.93196 0.95392 0.98633 1.70030 1.33787 1.13251 1.31469 0.86324 0.78829 0.78086 0.82916 1.19532 1.20725 1.19531 1.20855 1.00860 0.90441 0.96913 1.21013 0.92024 0.99396 1.04981 1.17505 0.90067 0.80606 1.05473 1.91421 1.80548 1.46278 1.94257 0.91183 0.90953 0.91598 0.84489 0.91828 0.84458 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.83 36.01 0.35 -1.07 15 2 C -0.13 -2.13 5.89 -104.55 -0.62 -2.74 15 3 C -0.07 -1.31 9.05 -39.59 -0.36 -1.67 15 4 C -0.11 -2.33 4.93 -104.62 -0.52 -2.85 15 5 C 0.44 11.52 1.67 -29.03 -0.05 11.47 15 6 F -0.22 -5.99 15.75 2.25 0.04 -5.96 15 7 F -0.22 -5.99 15.75 2.25 0.04 -5.95 15 8 C -0.59 -16.12 8.59 -34.44 -0.30 -16.42 15 9 H 0.08 2.09 7.74 -52.49 -0.41 1.69 15 10 C 0.09 2.37 5.38 -17.82 -0.10 2.27 15 11 N -0.85 -24.74 12.62 55.43 0.70 -24.04 15 12 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 15 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 16 C -0.07 -1.39 9.40 -39.60 -0.37 -1.76 15 17 C -0.16 -2.56 10.03 -39.51 -0.40 -2.95 15 18 C 0.08 1.37 7.24 -39.41 -0.29 1.09 15 19 F -0.15 -2.29 16.48 2.25 0.04 -2.25 15 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.07 0.87 8.09 -51.93 -0.42 0.45 15 22 H 0.07 0.80 7.64 -51.93 -0.40 0.40 15 23 H 0.14 2.57 7.60 -52.49 -0.40 2.18 15 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 25 H 0.14 2.54 7.60 -52.49 -0.40 2.14 15 26 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -29.77 246.65 -5.13 -34.89 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -2.00 Total: -1.38 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.63 Total: -14.62 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.70 Total: -24.04 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 0.11 Total: -14.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.77 -5.13 -34.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259031956.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.111 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds