Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38218 * 120.01553 * 2 1 4 4 C 1.38225 * 120.02208 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96960 * 180.02562 * 4 3 2 6 6 F 1.39897 * 109.47316 * 30.00117 * 5 4 3 7 7 F 1.39901 * 109.46956 * 150.00174 * 5 4 3 8 8 C 1.50698 * 109.47249 * 269.99909 * 5 4 3 9 9 H 1.07997 * 119.99899 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00208 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99980 * 0.02562 * 10 8 5 12 12 Si 1.86797 * 120.00231 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.47157 * 60.00245 * 12 10 8 14 14 H 1.48499 * 109.47499 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47370 * 300.00267 * 12 10 8 16 16 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 17 17 C 1.38176 * 120.02823 * 359.97438 * 16 4 3 18 18 C 1.38445 * 120.00815 * 179.97438 * 2 1 3 19 19 F 1.35093 * 120.02545 * 359.74916 * 18 2 1 20 20 H 1.08996 * 109.47218 * 270.02360 * 1 2 3 21 21 H 1.09004 * 109.46567 * 30.01967 * 1 2 3 22 22 H 1.08997 * 109.47335 * 150.01519 * 1 2 3 23 23 H 1.07992 * 119.98884 * 359.97438 * 3 2 1 24 24 H 0.96999 * 120.00019 * 179.97438 * 11 10 8 25 25 H 1.08000 * 119.98535 * 180.02562 * 16 4 3 26 26 H 1.08000 * 120.01901 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.3334 2.5026 0.0011 6 9 3.5765 3.4769 0.6605 7 9 5.5556 2.3359 0.6610 8 6 4.5848 2.9381 -1.4195 9 1 4.2343 2.3305 -2.2406 10 6 5.2624 4.1122 -1.6709 11 7 5.6897 4.8519 -0.6710 12 14 5.5747 4.6517 -3.4318 13 1 4.2776 4.8290 -4.1327 14 1 6.3174 5.9377 -3.4313 15 1 6.3780 3.6172 -4.1314 16 6 4.2733 0.0003 0.0016 17 6 3.5843 -1.1974 0.0027 18 6 2.1994 -1.1989 0.0005 19 9 1.5246 -2.3692 0.0062 20 1 -0.3633 0.0004 1.0276 21 1 -0.3632 0.8899 -0.5142 22 1 -0.3634 -0.8901 -0.5136 23 1 1.6585 2.1321 -0.0004 24 1 6.1667 5.6778 -0.8479 25 1 5.3533 0.0017 0.0024 26 1 4.1254 -2.1320 0.0039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259031956.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = -152.103492 kcal Electronic energy + Delta-G solvation = -15831.008551 eV Core-core repulsion = 12651.599492 eV Total energy + Delta-G solvation = -3179.409059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.91676 -49.08714 -47.15164 -40.06235 -35.03163 -33.94936 -32.41718 -28.85983 -27.86311 -25.21793 -23.40952 -21.70950 -19.37458 -18.61631 -17.99448 -17.81266 -16.76423 -16.68271 -16.66964 -15.84949 -15.36918 -14.39661 -14.34171 -14.26383 -14.04474 -13.92717 -13.90880 -13.51421 -13.46209 -13.00366 -12.82611 -12.72058 -12.29068 -12.12932 -11.96867 -11.04508 -10.93608 -9.91689 -9.56977 -8.39433 -6.77273 0.06191 0.22237 1.39153 1.43167 1.52133 2.27705 2.52906 2.90621 3.18176 3.29599 3.70695 3.82338 4.22038 4.28162 4.40443 4.63015 4.74619 4.75763 4.91306 5.04618 5.13440 5.18753 5.28270 5.37647 5.49595 5.66857 5.88811 6.38468 7.09272 8.65745 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.036231 B = 0.008051 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.623052 B = 3477.110189 C = 3546.894855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C -0.079 4.079 4 C -0.134 4.134 5 C 0.423 3.577 6 F -0.233 7.233 7 F -0.233 7.233 8 C -0.607 4.607 9 H 0.084 0.916 10 C 0.031 3.969 11 N -0.896 5.896 12 Si 0.985 3.015 13 H -0.260 1.260 14 H -0.276 1.276 15 H -0.260 1.260 16 C -0.083 4.083 17 C -0.141 4.141 18 C 0.087 3.913 19 F -0.135 7.135 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.133 0.867 24 H 0.275 0.725 25 H 0.135 0.865 26 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 -9.579 -0.822 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.135 4.135 5 C 0.387 3.613 6 F -0.215 7.215 7 F -0.214 7.214 8 C -0.643 4.643 9 H 0.102 0.898 10 C -0.174 4.174 11 N -0.530 5.530 12 Si 0.807 3.193 13 H -0.185 1.185 14 H -0.201 1.201 15 H -0.185 1.185 16 C -0.102 4.102 17 C -0.159 4.159 18 C 0.067 3.933 19 F -0.114 7.114 20 H 0.105 0.895 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.151 0.849 24 H 0.084 0.916 25 H 0.153 0.847 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.851 -9.434 -0.702 11.680 hybrid contribution 0.479 0.574 -0.348 0.824 sum -6.373 -8.860 -1.050 10.964 Atomic orbital electron populations 1.20782 0.87681 1.04209 1.03849 1.20124 0.98668 0.90758 1.02459 1.20762 0.92479 0.98354 0.98145 1.20737 0.95458 0.95066 1.02245 1.17337 0.73950 0.82108 0.87906 1.92826 1.76871 1.67566 1.84203 1.92828 1.48725 1.95707 1.84180 1.21805 1.42331 1.09796 0.90405 0.89766 1.26164 0.92592 0.95269 1.03376 1.70152 1.34882 1.13902 1.34037 0.85210 0.79143 0.77872 0.77103 1.18458 1.20088 1.18473 1.20868 1.00920 0.90601 0.97765 1.21257 0.92200 0.99584 1.02872 1.17573 0.90220 0.80921 1.04548 1.91457 1.80300 1.45566 1.94045 0.89509 0.89990 0.90162 0.84947 0.91574 0.84693 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 9.83 71.24 0.70 -1.81 15 2 C -0.12 -3.72 5.89 -19.82 -0.12 -3.83 15 3 C -0.08 -3.02 9.05 22.26 0.20 -2.82 15 4 C -0.13 -5.88 4.93 -19.86 -0.10 -5.98 15 5 C 0.42 22.81 1.67 29.10 0.05 22.86 15 6 F -0.23 -13.35 15.75 44.97 0.71 -12.64 15 7 F -0.23 -13.33 15.75 44.97 0.71 -12.62 15 8 C -0.61 -33.77 8.59 25.60 0.22 -33.55 15 9 H 0.08 4.47 7.74 -2.91 -0.02 4.44 15 10 C 0.03 1.74 5.38 84.65 0.46 2.20 15 11 N -0.90 -53.14 12.62 21.45 0.27 -52.87 15 12 Si 0.99 42.21 29.54 68.60 2.03 44.23 15 13 H -0.26 -10.63 7.11 99.48 0.71 -9.93 15 14 H -0.28 -11.44 7.11 99.48 0.71 -10.73 15 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 15 16 C -0.08 -3.14 9.40 22.26 0.21 -2.93 15 17 C -0.14 -4.28 10.03 22.31 0.22 -4.05 15 18 C 0.09 2.62 7.24 22.38 0.16 2.78 15 19 F -0.14 -3.71 16.48 44.97 0.74 -2.97 15 20 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.08 1.74 8.09 -2.38 -0.02 1.73 15 22 H 0.08 1.64 7.64 -2.39 -0.02 1.62 15 23 H 0.13 5.04 7.60 -2.91 -0.02 5.02 15 24 H 0.28 15.14 8.31 -92.71 -0.77 14.37 15 25 H 0.14 5.03 7.60 -2.91 -0.02 5.01 15 26 H 0.17 3.85 8.06 -2.91 -0.02 3.82 15 Total: -1.00 -64.52 246.65 7.66 -56.86 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.20 Total: 7.15 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 2.01 Total: -27.14 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.27 Total: -52.87 kcal Atomic # 9 Polarization: -30.39 SS G_CDS: 2.16 Total: -28.23 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -64.52 7.66 -56.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259031956.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.247 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds