Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36390 * 119.65965 * 2 1 4 4 C 1.39249 * 120.28430 * 180.28459 * 3 2 1 5 5 O 1.34732 * 133.25550 * 179.76112 * 4 3 2 6 6 C 1.34451 * 110.96592 * 179.97438 * 5 4 3 7 7 C 1.33950 * 110.22637 * 359.97438 * 6 5 4 8 8 C 1.40798 * 119.56034 * 359.75267 * 4 3 2 9 9 C 1.38978 * 120.21302 * 359.97438 * 8 4 3 10 10 C 1.39499 * 119.33057 * 359.97438 * 9 8 4 11 11 C 1.47683 * 120.03279 * 179.97438 * 10 9 8 12 12 O 1.21799 * 119.99819 * 173.92488 * 11 10 9 13 13 C 1.41799 * 120.00268 * 353.92769 * 11 10 9 14 14 H 1.08001 * 119.99618 * 359.97438 * 13 11 10 15 15 C 1.40340 * 120.00032 * 179.72219 * 13 11 10 16 16 N 1.30534 * 119.99955 * 0.27133 * 15 13 11 17 17 Si 1.86798 * 119.99924 * 180.27773 * 15 13 11 18 18 H 1.48498 * 109.47096 * 89.99837 * 17 15 13 19 19 H 1.48501 * 109.46923 * 209.99724 * 17 15 13 20 20 H 1.48497 * 109.47146 * 329.99467 * 17 15 13 21 21 H 1.09002 * 109.47202 * 263.49460 * 1 2 3 22 22 H 1.09002 * 109.46915 * 23.49291 * 1 2 3 23 23 H 1.08997 * 109.47658 * 143.49663 * 1 2 3 24 24 H 1.07992 * 119.85985 * 0.06180 * 3 2 1 25 25 H 1.08006 * 124.89036 * 180.02562 * 6 5 4 26 26 H 1.08001 * 126.92303 * 180.02562 * 7 6 5 27 27 H 1.07992 * 120.33331 * 180.02562 * 9 8 4 28 28 H 0.97002 * 120.00042 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1852 0.0000 4 6 3.5743 1.2004 -0.0060 5 8 4.4868 2.1917 -0.0116 6 6 5.7363 1.6953 -0.0155 7 6 5.7027 0.3562 -0.0121 8 6 4.2823 -0.0167 -0.0067 9 6 3.5958 -1.2251 -0.0010 10 6 2.2008 -1.2185 0.0060 11 6 1.4556 -2.4935 0.0116 12 8 0.2434 -2.4898 0.1293 13 6 2.1514 -3.7220 -0.1201 14 1 3.2264 -3.7252 -0.2249 15 6 1.4439 -4.9339 -0.1090 16 7 0.1446 -4.9300 0.0173 17 14 2.3613 -6.5526 -0.2746 18 1 2.7393 -7.0475 1.0735 19 1 1.4871 -7.5510 -0.9413 20 1 3.5865 -6.3462 -1.0878 21 1 -0.3634 -0.1164 1.0211 22 1 -0.3633 0.9425 -0.4097 23 1 -0.3634 -0.8260 -0.6113 24 1 1.6341 2.1159 0.0010 25 1 6.6375 2.2906 -0.0198 26 1 6.5496 -0.3140 -0.0136 27 1 4.1368 -2.1597 -0.0012 28 1 -0.3444 -5.7676 0.0254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259329995.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = -15.891850 kcal Electronic energy + Delta-G solvation = -15149.158347 eV Core-core repulsion = 12517.512608 eV Total energy + Delta-G solvation = -2631.645739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.94112 -38.20773 -35.79762 -33.02261 -32.52288 -30.42435 -29.94224 -26.81078 -25.73134 -23.33518 -21.13832 -20.71864 -19.70588 -17.07727 -16.67376 -15.94667 -15.68158 -15.35968 -14.31350 -13.74048 -13.38851 -13.13975 -12.90416 -12.63078 -12.16151 -11.81060 -11.66930 -11.42671 -11.17699 -11.01812 -10.75062 -10.60210 -10.35662 -10.04359 -9.67730 -9.00982 -7.74523 -7.64435 -7.38771 -6.31727 -4.94462 1.48181 1.79184 2.77554 3.02591 3.10771 3.13916 3.17922 3.97218 3.98015 4.57324 4.86849 5.12630 5.44842 5.66101 5.69729 5.73451 5.84045 6.01418 6.13804 6.35480 6.42936 6.60159 6.71797 6.81291 6.97910 7.07215 7.19623 7.28275 7.39580 7.70715 8.00462 8.74672 8.78952 10.25951 10.47497 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.033038 B = 0.007961 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.310505 B = 3516.227351 C = 4345.068941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.022 4.022 3 C -0.133 4.133 4 C 0.047 3.953 5 O -0.203 6.203 6 C -0.017 4.017 7 C -0.202 4.202 8 C -0.154 4.154 9 C -0.044 4.044 10 C -0.123 4.123 11 C 0.390 3.610 12 O -0.532 6.532 13 C -0.516 4.516 14 H 0.073 0.927 15 C 0.081 3.919 16 N -0.734 5.734 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.261 1.261 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.106 0.894 24 H 0.122 0.878 25 H 0.200 0.800 26 H 0.153 0.847 27 H 0.135 0.865 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 7.185 -0.388 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.023 4.023 3 C -0.152 4.152 4 C 0.000 4.000 5 O -0.105 6.105 6 C -0.082 4.082 7 C -0.221 4.221 8 C -0.155 4.155 9 C -0.062 4.062 10 C -0.124 4.124 11 C 0.286 3.714 12 O -0.423 6.423 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.143 4.143 16 N -0.362 5.362 17 Si 0.730 3.270 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.185 1.185 21 H 0.088 0.912 22 H 0.059 0.941 23 H 0.124 0.876 24 H 0.140 0.860 25 H 0.217 0.783 26 H 0.170 0.830 27 H 0.152 0.848 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.090 7.416 -0.321 10.265 hybrid contribution 1.000 -0.827 -0.048 1.298 sum 8.089 6.589 -0.369 10.440 Atomic orbital electron populations 1.21028 0.89817 1.02100 1.03644 1.19739 0.96946 0.90940 0.94632 1.19393 0.88050 0.98637 1.09086 1.19752 0.90992 0.85430 1.03814 1.83896 1.14522 1.35253 1.76854 1.23716 0.85738 0.94278 1.04454 1.22491 0.95648 0.95202 1.08759 1.19963 0.92722 0.94324 1.08448 1.20972 0.93499 0.95796 0.95970 1.21667 0.93492 0.97556 0.99683 1.17999 0.88320 0.85531 0.79500 1.90438 1.15071 1.87755 1.49005 1.20935 0.95422 0.91743 1.46586 0.90857 1.25980 0.94615 1.00945 0.92743 1.69945 1.07455 1.28262 1.30571 0.86379 0.80360 0.80983 0.79309 1.19376 1.20127 1.18510 0.91232 0.94064 0.87563 0.85991 0.78328 0.82981 0.84769 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 8.68 36.01 0.31 -1.93 15 2 C -0.02 -0.48 5.88 -104.55 -0.61 -1.09 15 3 C -0.13 -2.54 9.59 -39.87 -0.38 -2.93 15 4 C 0.05 0.90 7.42 -38.24 -0.28 0.61 15 5 O -0.20 -3.40 10.57 4.12 0.04 -3.36 15 6 C -0.02 -0.23 11.95 29.23 0.35 0.12 15 7 C -0.20 -3.05 11.15 -37.60 -0.42 -3.47 15 8 C -0.15 -2.96 6.39 -105.17 -0.67 -3.64 15 9 C -0.04 -0.94 9.48 -38.84 -0.37 -1.31 15 10 C -0.12 -2.92 5.88 -104.83 -0.62 -3.54 15 11 C 0.39 10.77 6.84 -34.37 -0.23 10.53 15 12 O -0.53 -15.93 11.85 5.10 0.06 -15.87 15 13 C -0.52 -13.91 8.85 -37.43 -0.33 -14.24 15 14 H 0.07 1.81 6.06 -52.49 -0.32 1.49 15 15 C 0.08 2.12 5.50 -17.31 -0.10 2.02 15 16 N -0.73 -20.52 11.73 55.57 0.65 -19.87 15 17 Si 0.91 18.94 29.56 -169.99 -5.03 13.91 15 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 21 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 22 H 0.04 0.69 8.00 -51.93 -0.42 0.27 15 23 H 0.11 2.49 5.83 -51.93 -0.30 2.19 15 24 H 0.12 1.99 8.03 -52.49 -0.42 1.56 15 25 H 0.20 1.64 8.06 -52.48 -0.42 1.22 15 26 H 0.15 1.86 8.06 -52.49 -0.42 1.43 15 27 H 0.13 2.73 6.25 -52.49 -0.33 2.40 15 28 H 0.27 6.89 8.29 -40.82 -0.34 6.55 15 LS Contribution 249.37 15.07 3.76 3.76 Total: -1.00 -31.36 249.37 -6.06 -37.42 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -2.19 Total: 2.86 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.36 Total: -18.85 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.65 Total: -19.87 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.10 Total: -19.23 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.36 -6.06 -37.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259329995.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.528 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds