Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36390 * 119.65965 * 2 1 4 4 C 1.39249 * 120.28430 * 180.28459 * 3 2 1 5 5 O 1.34732 * 133.25550 * 179.76112 * 4 3 2 6 6 C 1.34451 * 110.96592 * 179.97438 * 5 4 3 7 7 C 1.33950 * 110.22637 * 359.97438 * 6 5 4 8 8 C 1.40798 * 119.56034 * 359.75267 * 4 3 2 9 9 C 1.38978 * 120.21302 * 359.97438 * 8 4 3 10 10 C 1.39499 * 119.33057 * 359.97438 * 9 8 4 11 11 C 1.47683 * 120.03279 * 179.97438 * 10 9 8 12 12 O 1.21799 * 119.99819 * 173.92488 * 11 10 9 13 13 C 1.41799 * 120.00268 * 353.92769 * 11 10 9 14 14 H 1.08001 * 119.99618 * 359.97438 * 13 11 10 15 15 C 1.40340 * 120.00032 * 179.72219 * 13 11 10 16 16 N 1.30534 * 119.99955 * 0.27133 * 15 13 11 17 17 Si 1.86798 * 119.99924 * 180.27773 * 15 13 11 18 18 H 1.48498 * 109.47096 * 89.99837 * 17 15 13 19 19 H 1.48501 * 109.46923 * 209.99724 * 17 15 13 20 20 H 1.48497 * 109.47146 * 329.99467 * 17 15 13 21 21 H 1.09002 * 109.47202 * 263.49460 * 1 2 3 22 22 H 1.09002 * 109.46915 * 23.49291 * 1 2 3 23 23 H 1.08997 * 109.47658 * 143.49663 * 1 2 3 24 24 H 1.07992 * 119.85985 * 0.06180 * 3 2 1 25 25 H 1.08006 * 124.89036 * 180.02562 * 6 5 4 26 26 H 1.08001 * 126.92303 * 180.02562 * 7 6 5 27 27 H 1.07992 * 120.33331 * 180.02562 * 9 8 4 28 28 H 0.97002 * 120.00042 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1852 0.0000 4 6 3.5743 1.2004 -0.0060 5 8 4.4868 2.1917 -0.0116 6 6 5.7363 1.6953 -0.0155 7 6 5.7027 0.3562 -0.0121 8 6 4.2823 -0.0167 -0.0067 9 6 3.5958 -1.2251 -0.0010 10 6 2.2008 -1.2185 0.0060 11 6 1.4556 -2.4935 0.0116 12 8 0.2434 -2.4898 0.1293 13 6 2.1514 -3.7220 -0.1201 14 1 3.2264 -3.7252 -0.2249 15 6 1.4439 -4.9339 -0.1090 16 7 0.1446 -4.9300 0.0173 17 14 2.3613 -6.5526 -0.2746 18 1 2.7393 -7.0475 1.0735 19 1 1.4871 -7.5510 -0.9413 20 1 3.5865 -6.3462 -1.0878 21 1 -0.3634 -0.1164 1.0211 22 1 -0.3633 0.9425 -0.4097 23 1 -0.3634 -0.8260 -0.6113 24 1 1.6341 2.1159 0.0010 25 1 6.6375 2.2906 -0.0198 26 1 6.5496 -0.3140 -0.0136 27 1 4.1368 -2.1597 -0.0012 28 1 -0.3444 -5.7676 0.0254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259329995.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -35.195965 kcal Electronic energy + Delta-G solvation = -15149.995436 eV Core-core repulsion = 12517.512608 eV Total energy + Delta-G solvation = -2632.482828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.28339 -39.94026 -37.66491 -34.87956 -34.13155 -31.93406 -31.51582 -28.72350 -27.29773 -24.97331 -22.77765 -22.01403 -21.40543 -18.79956 -18.12010 -17.76093 -17.02197 -17.01122 -15.98202 -15.23427 -15.05883 -14.93440 -14.66050 -13.85663 -13.66006 -13.58997 -13.29850 -13.26312 -12.83287 -12.69326 -12.43636 -12.42009 -12.04033 -11.71831 -11.00776 -10.97151 -9.44185 -9.38835 -9.03363 -8.30587 -7.05911 0.04093 0.16452 1.37512 1.38071 1.52028 1.54301 1.90008 2.18949 2.20959 2.78011 3.61510 3.70262 3.78397 4.07347 4.12374 4.29315 4.44784 4.60634 4.69010 4.88334 4.89713 4.97933 5.17129 5.26104 5.29665 5.44204 5.56283 5.73197 5.76106 5.98497 6.26273 6.70764 6.78486 8.24976 8.48469 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.033038 B = 0.007961 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.310505 B = 3516.227351 C = 4345.068941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.045 4.045 3 C -0.122 4.122 4 C 0.038 3.962 5 O -0.204 6.204 6 C 0.013 3.987 7 C -0.220 4.220 8 C -0.166 4.166 9 C -0.050 4.050 10 C -0.160 4.160 11 C 0.368 3.632 12 O -0.572 6.572 13 C -0.546 4.546 14 H 0.089 0.911 15 C 0.027 3.973 16 N -0.784 5.784 17 Si 0.992 3.008 18 H -0.259 1.259 19 H -0.268 1.268 20 H -0.249 1.249 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.153 0.847 25 H 0.260 0.740 26 H 0.181 0.819 27 H 0.135 0.865 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.063 8.404 -0.577 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.046 4.046 3 C -0.140 4.140 4 C -0.010 4.010 5 O -0.106 6.106 6 C -0.051 4.051 7 C -0.238 4.238 8 C -0.167 4.167 9 C -0.068 4.068 10 C -0.161 4.161 11 C 0.267 3.733 12 O -0.466 6.466 13 C -0.576 4.576 14 H 0.107 0.893 15 C -0.192 4.192 16 N -0.413 5.413 17 Si 0.811 3.189 18 H -0.183 1.183 19 H -0.192 1.192 20 H -0.172 1.172 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.171 0.829 25 H 0.275 0.725 26 H 0.199 0.801 27 H 0.152 0.848 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.240 8.656 -0.511 13.418 hybrid contribution 0.151 -1.028 0.014 1.039 sum 10.391 7.627 -0.497 12.899 Atomic orbital electron populations 1.20830 0.89779 1.02447 1.02471 1.19802 0.97256 0.91234 0.96279 1.19560 0.88641 0.98697 1.07077 1.19882 0.91441 0.86099 1.03563 1.83943 1.15481 1.34654 1.76472 1.24864 0.85720 0.94357 1.00141 1.22850 0.94172 0.96590 1.10236 1.20349 0.95355 0.93480 1.07473 1.20939 0.92625 0.97009 0.96229 1.21412 0.94675 0.96850 1.03202 1.18619 0.88285 0.87665 0.78707 1.90399 1.16585 1.88889 1.50715 1.21413 0.96418 0.92560 1.47232 0.89340 1.27171 0.95409 1.05249 0.91396 1.70075 1.09662 1.29950 1.31570 0.85093 0.78998 0.75032 0.79802 1.18315 1.19206 1.17192 0.92266 0.90290 0.91361 0.82905 0.72475 0.80125 0.84773 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.22 8.68 71.24 0.62 -3.60 15 2 C -0.05 -2.00 5.88 -19.82 -0.12 -2.11 15 3 C -0.12 -4.50 9.59 22.08 0.21 -4.29 15 4 C 0.04 1.35 7.42 23.14 0.17 1.52 15 5 O -0.20 -5.98 10.57 -8.16 -0.09 -6.06 15 6 C 0.01 0.27 11.95 66.84 0.80 1.07 15 7 C -0.22 -5.79 11.15 23.55 0.26 -5.52 15 8 C -0.17 -6.13 6.39 -20.22 -0.13 -6.26 15 9 C -0.05 -2.15 9.48 22.75 0.22 -1.94 15 10 C -0.16 -7.97 5.88 -20.00 -0.12 -8.09 15 11 C 0.37 21.59 6.84 25.65 0.18 21.77 15 12 O -0.57 -36.78 11.85 -4.67 -0.06 -36.83 15 13 C -0.55 -30.67 8.85 23.66 0.21 -30.46 15 14 H 0.09 4.49 6.06 -2.91 -0.02 4.48 15 15 C 0.03 1.45 5.50 85.40 0.47 1.92 15 16 N -0.78 -45.81 11.73 21.89 0.26 -45.56 15 17 Si 0.99 39.24 29.56 68.60 2.03 41.26 15 18 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 19 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 20 H -0.25 -9.23 7.11 99.48 0.71 -8.53 15 21 H 0.06 2.56 8.14 -2.39 -0.02 2.54 15 22 H 0.08 2.64 8.00 -2.39 -0.02 2.63 15 23 H 0.07 3.44 5.83 -2.39 -0.01 3.43 15 24 H 0.15 4.57 8.03 -2.91 -0.02 4.55 15 25 H 0.26 2.27 8.06 -2.91 -0.02 2.25 15 26 H 0.18 3.62 8.06 -2.91 -0.02 3.59 15 27 H 0.13 5.58 6.25 -2.91 -0.02 5.56 15 28 H 0.28 14.74 8.29 -92.71 -0.77 13.97 15 Total: -1.00 -73.26 249.37 6.11 -67.15 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.19 Total: 16.03 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 2.77 Total: -35.99 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.26 Total: -45.56 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.14 Total: -42.90 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.26 kcal Total: -73.26 6.11 -67.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259329995.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.953 kcal (2) G-P(sol) polarization free energy of solvation -73.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds