Wall clock time and date at job start Mon Mar 30 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00051 * 2 1 4 4 H 1.48494 * 109.46964 * 270.00622 * 3 2 1 5 5 H 1.48499 * 109.46858 * 30.00183 * 3 2 1 6 6 H 1.48490 * 109.47218 * 150.00383 * 3 2 1 7 7 C 1.37877 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00273 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46999 * 179.97438 * 9 7 2 11 11 O 1.21375 * 119.99952 * 0.02562 * 10 9 7 12 12 C 1.46215 * 119.99828 * 179.97438 * 10 9 7 13 13 C 1.36540 * 127.19140 * 359.97438 * 12 10 9 14 14 O 1.33667 * 109.77778 * 180.02562 * 13 12 10 15 15 C 1.34933 * 111.43885 * 0.02562 * 14 13 12 16 16 C 1.38970 * 133.04491 * 180.02562 * 15 14 13 17 17 C 1.37855 * 119.97775 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.64816 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.18481 * 359.97438 * 18 17 16 20 20 C 1.39044 * 119.63114 * 0.02562 * 19 18 17 21 21 H 0.97001 * 120.00301 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47238 * 60.00418 * 9 7 2 23 23 H 1.08996 * 109.47136 * 300.00051 * 9 7 2 24 24 H 1.08004 * 125.10486 * 0.02562 * 13 12 10 25 25 H 1.08005 * 120.01289 * 0.27047 * 16 15 14 26 26 H 1.08002 * 119.67382 * 179.97438 * 17 16 15 27 27 H 1.08002 * 119.90801 * 179.97438 * 18 17 16 28 28 H 1.07997 * 120.17973 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 8 3.4236 -3.4227 -0.0022 12 6 1.7429 -5.0231 -0.0015 13 6 0.4423 -5.4386 0.0004 14 8 0.3943 -6.7744 0.0006 15 6 1.6317 -7.3124 -0.0005 16 6 2.0967 -8.6220 -0.0012 17 6 3.4525 -8.8716 -0.0029 18 6 4.3636 -7.8264 -0.0033 19 6 3.9207 -6.5207 -0.0026 20 6 2.5553 -6.2579 -0.0009 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 -0.4182 -4.7860 0.0015 25 1 1.3962 -9.4440 -0.0053 26 1 3.8084 -9.8913 -0.0030 27 1 5.4231 -8.0356 -0.0042 28 1 4.6304 -5.7066 -0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259355677.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:45 Heat of formation + Delta-G solvation = -35.664922 kcal Electronic energy + Delta-G solvation = -14792.483354 eV Core-core repulsion = 12159.980191 eV Total energy + Delta-G solvation = -2632.503164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.56134 -39.87569 -38.83150 -35.14065 -33.95696 -31.63277 -31.30536 -29.99230 -26.36258 -24.56654 -23.55894 -23.09753 -20.25631 -18.71264 -18.13600 -17.98858 -17.32461 -16.76323 -16.65324 -15.85389 -15.57382 -15.31571 -15.03592 -14.71113 -14.14134 -13.59581 -13.32628 -13.22228 -12.93014 -12.77524 -12.60219 -12.10599 -11.96831 -11.48059 -11.14611 -10.63948 -10.41489 -9.68208 -9.25903 -8.27281 -6.34828 -0.28141 0.28322 0.60447 1.38585 1.38846 1.51389 1.64645 2.04688 2.38744 2.74564 3.07957 3.25647 3.46632 3.83963 3.93685 4.13359 4.34205 4.41938 4.56280 4.70855 4.91524 5.14130 5.14453 5.23345 5.25613 5.39855 5.49414 5.60368 5.69307 6.05569 6.10804 6.74856 6.86869 7.33905 8.84479 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.051306 B = 0.005927 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.613844 B = 4722.672702 C = 5253.143215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.052 0.948 9 C -0.016 4.016 10 C 0.422 3.578 11 O -0.502 6.502 12 C -0.299 4.299 13 C 0.112 3.888 14 O -0.181 6.181 15 C 0.020 3.980 16 C -0.099 4.099 17 C -0.089 4.089 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.127 4.127 21 H 0.268 0.732 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.255 0.745 25 H 0.166 0.834 26 H 0.181 0.819 27 H 0.158 0.842 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -18.074 -0.022 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.053 4.053 10 C 0.303 3.697 11 O -0.381 6.381 12 C -0.302 4.302 13 C 0.044 3.956 14 O -0.080 6.080 15 C -0.026 4.026 16 C -0.117 4.117 17 C -0.107 4.107 18 C -0.140 4.140 19 C -0.119 4.119 20 C -0.128 4.128 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.271 0.729 25 H 0.183 0.817 26 H 0.198 0.802 27 H 0.176 0.824 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.644 -18.029 -0.019 18.104 hybrid contribution 0.358 1.587 -0.005 1.626 sum 2.002 -16.443 -0.024 16.564 Atomic orbital electron populations 1.70000 1.06980 1.28136 1.50904 1.25736 0.95865 1.02559 0.94364 0.85515 0.78522 0.78844 0.78596 1.19667 1.19713 1.20068 1.21400 0.93666 0.91711 1.51673 0.92959 1.19448 0.95035 0.91482 0.99335 1.22316 0.89856 0.88568 0.68940 1.90348 1.20571 1.87863 1.39339 1.22007 0.95053 0.94886 1.18227 1.25324 0.98611 0.80593 0.91106 1.83813 1.29312 1.20296 1.74619 1.20062 0.81241 0.95581 1.05726 1.20461 0.97150 0.91154 1.02956 1.21441 0.90657 1.01102 0.97471 1.21481 1.01952 0.90750 0.99864 1.20787 0.92986 0.98534 0.99635 1.19974 0.95632 0.91896 1.05317 0.92296 0.92888 0.92870 0.72921 0.81667 0.80190 0.82408 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.30 13.29 21.45 0.28 -53.02 15 2 C 0.01 0.79 5.46 84.66 0.46 1.25 15 3 Si 0.96 45.33 29.54 68.60 2.03 47.36 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 15 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 7 C -0.55 -32.40 8.92 25.60 0.23 -32.17 15 8 H 0.05 3.26 6.75 -2.91 -0.02 3.24 15 9 C -0.02 -0.84 4.89 29.10 0.14 -0.70 15 10 C 0.42 20.34 7.11 27.76 0.20 20.54 15 11 O -0.50 -27.30 15.38 -3.32 -0.05 -27.35 15 12 C -0.30 -11.73 6.28 -19.07 -0.12 -11.85 15 13 C 0.11 3.38 11.54 67.42 0.78 4.16 15 14 O -0.18 -5.20 10.52 -2.80 -0.03 -5.23 15 15 C 0.02 0.58 7.38 22.92 0.17 0.75 15 16 C -0.10 -2.05 10.06 22.35 0.22 -1.83 15 17 C -0.09 -1.56 10.01 22.28 0.22 -1.34 15 18 C -0.12 -2.76 10.04 22.29 0.22 -2.54 15 19 C -0.10 -3.32 9.87 22.38 0.22 -3.10 15 20 C -0.13 -4.58 6.28 -20.08 -0.13 -4.70 15 21 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 22 H 0.05 2.70 8.14 -2.38 -0.02 2.68 15 23 H 0.05 2.71 8.14 -2.39 -0.02 2.69 15 24 H 0.26 5.85 7.97 -2.91 -0.02 5.83 15 25 H 0.17 2.24 8.06 -2.91 -0.02 2.22 15 26 H 0.18 1.49 8.06 -2.91 -0.02 1.47 15 27 H 0.16 2.52 8.06 -2.91 -0.02 2.50 15 28 H 0.11 4.06 7.53 -2.91 -0.02 4.04 15 Total: -1.00 -72.85 258.91 6.03 -66.82 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.18 Total: 2.94 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 2.62 Total: -31.52 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.28 Total: -53.02 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.08 Total: -32.58 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.85 6.03 -66.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259355677.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.158 kcal (2) G-P(sol) polarization free energy of solvation -72.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds