Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39003 * 120.33283 * 2 1 4 4 C 1.46861 * 134.30750 * 359.94437 * 3 2 1 5 5 C 1.33943 * 106.15124 * 180.02562 * 4 3 2 6 6 O 1.34453 * 110.21661 * 0.02562 * 5 4 3 7 7 C 1.34724 * 110.96262 * 0.02562 * 6 5 4 8 8 C 1.39293 * 133.25265 * 180.02562 * 7 6 5 9 9 C 1.36359 * 120.28983 * 179.77309 * 8 7 6 10 10 C 1.39463 * 120.33071 * 179.97438 * 2 1 3 11 11 C 1.47677 * 120.04040 * 0.02562 * 10 2 1 12 12 O 1.21801 * 119.99993 * 354.23761 * 11 10 2 13 13 C 1.41801 * 120.00324 * 174.22907 * 11 10 2 14 14 H 1.07994 * 119.99767 * 0.02562 * 13 11 10 15 15 C 1.40337 * 120.00113 * 179.72747 * 13 11 10 16 16 N 1.30536 * 119.99896 * 0.27800 * 15 13 11 17 17 Si 1.86798 * 119.99805 * 180.28096 * 15 13 11 18 18 H 1.48503 * 109.47291 * 90.00228 * 17 15 13 19 19 H 1.48502 * 109.46945 * 209.99983 * 17 15 13 20 20 H 1.48499 * 109.46955 * 329.99770 * 17 15 13 21 21 H 1.08999 * 109.47324 * 263.37750 * 1 2 3 22 22 H 1.08999 * 109.46988 * 23.38210 * 1 2 3 23 23 H 1.09003 * 109.46949 * 143.37918 * 1 2 3 24 24 H 1.08002 * 126.92476 * 0.06349 * 4 3 2 25 25 H 1.08005 * 124.89797 * 179.97438 * 5 4 3 26 26 H 1.08000 * 119.85877 * 359.97438 * 8 7 6 27 27 H 1.07996 * 119.66010 * 180.23812 * 9 8 7 28 28 H 0.97004 * 119.99618 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1997 0.0000 4 6 1.8200 2.6159 -0.0010 5 6 2.9619 3.3160 -0.0010 6 8 4.0175 2.4832 -0.0006 7 6 3.6166 1.1969 -0.0009 8 6 4.3012 -0.0161 -0.0003 9 6 3.6138 -1.1938 0.0037 10 6 2.2113 -1.2037 0.0005 11 6 1.4812 -2.4874 0.0005 12 8 0.2678 -2.4979 0.1060 13 6 2.1927 -3.7078 -0.1224 14 1 3.2686 -3.6985 -0.2156 15 6 1.4994 -4.9280 -0.1166 16 7 0.1990 -4.9392 -0.0036 17 14 2.4375 -6.5359 -0.2707 18 1 2.8077 -7.0246 1.0819 19 1 1.5820 -7.5454 -0.9447 20 1 3.6684 -6.3161 -1.0717 21 1 -0.3634 -0.1185 1.0208 22 1 -0.3633 0.9433 -0.4078 23 1 -0.3633 -0.8248 -0.6130 24 1 0.8156 3.0129 -0.0011 25 1 3.0258 4.3941 -0.0020 26 1 5.3812 -0.0241 0.0002 27 1 4.1549 -2.1284 0.0081 28 1 -0.2802 -5.7825 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259455522.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = -35.671360 kcal Electronic energy + Delta-G solvation = -15191.577937 eV Core-core repulsion = 12559.074494 eV Total energy + Delta-G solvation = -2632.503443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.29762 -39.85106 -37.62501 -34.89428 -34.21059 -32.17064 -31.10311 -28.76169 -27.55544 -24.54796 -23.28465 -21.73097 -21.37884 -18.91005 -17.99625 -17.70835 -17.06034 -17.01806 -16.02645 -15.46527 -14.93093 -14.62731 -14.53034 -13.96367 -13.72976 -13.66213 -13.51415 -13.07759 -12.80792 -12.70064 -12.44618 -12.41776 -12.02418 -11.65881 -11.02621 -10.95991 -9.43245 -9.40116 -9.00563 -8.29252 -7.03841 0.05154 0.19315 1.39278 1.39891 1.52103 1.56242 1.91684 2.20555 2.22371 2.79654 3.62024 3.71781 3.78176 4.08581 4.17156 4.30073 4.50364 4.55750 4.71792 4.81741 4.84629 4.95934 5.18424 5.26373 5.33273 5.43164 5.57146 5.71806 5.77994 6.00757 6.26841 6.72482 6.81154 8.26782 8.50335 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.046755 B = 0.007236 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.719206 B = 3868.497274 C = 4448.855435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.032 4.032 3 C -0.162 4.162 4 C -0.224 4.224 5 C 0.016 3.984 6 O -0.201 6.201 7 C 0.035 3.965 8 C -0.120 4.120 9 C -0.067 4.067 10 C -0.165 4.165 11 C 0.367 3.633 12 O -0.576 6.576 13 C -0.544 4.544 14 H 0.095 0.905 15 C 0.025 3.975 16 N -0.786 5.786 17 Si 0.994 3.006 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.246 1.246 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.175 0.825 25 H 0.260 0.740 26 H 0.161 0.839 27 H 0.150 0.850 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 10.631 -0.488 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.033 4.033 3 C -0.163 4.163 4 C -0.243 4.243 5 C -0.048 4.048 6 O -0.102 6.102 7 C -0.012 4.012 8 C -0.138 4.138 9 C -0.085 4.085 10 C -0.167 4.167 11 C 0.266 3.734 12 O -0.470 6.470 13 C -0.574 4.574 14 H 0.113 0.887 15 C -0.194 4.194 16 N -0.415 5.415 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.169 1.169 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.192 0.808 25 H 0.276 0.724 26 H 0.179 0.821 27 H 0.168 0.832 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.172 10.671 -0.428 12.865 hybrid contribution -0.243 -0.855 0.018 0.889 sum 6.929 9.817 -0.410 12.023 Atomic orbital electron populations 1.20734 0.90719 1.01876 1.01979 1.19811 0.96700 0.90607 0.96162 1.20142 0.93664 0.94632 1.07884 1.22787 1.01433 0.89475 1.10601 1.24822 0.82660 0.97307 0.99986 1.83944 1.36157 1.13809 1.76328 1.20007 0.92735 0.84735 1.03727 1.19841 1.01135 0.86820 1.06035 1.21114 0.92683 0.98317 0.96372 1.21437 0.95498 0.96163 1.03553 1.18681 0.88332 0.87735 0.78632 1.90398 1.16801 1.88965 1.50872 1.21429 0.96552 0.92262 1.47184 0.88744 1.27213 0.95508 1.05290 0.91369 1.70094 1.10172 1.29469 1.31797 0.85070 0.78989 0.74942 0.79771 1.18365 1.19486 1.16903 0.92640 0.91084 0.91457 0.80774 0.72442 0.82134 0.83222 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.34 8.72 71.24 0.62 -3.71 15 2 C -0.03 -1.47 5.95 -19.38 -0.12 -1.59 15 3 C -0.16 -6.22 6.15 -20.22 -0.12 -6.35 15 4 C -0.22 -6.29 10.76 23.55 0.25 -6.03 15 5 C 0.02 0.35 11.95 66.84 0.80 1.15 15 6 O -0.20 -5.85 10.57 -8.11 -0.09 -5.94 15 7 C 0.04 1.26 7.42 23.14 0.17 1.43 15 8 C -0.12 -4.15 10.00 22.09 0.22 -3.93 15 9 C -0.07 -2.73 9.35 22.32 0.21 -2.52 15 10 C -0.17 -8.19 5.88 -20.00 -0.12 -8.31 15 11 C 0.37 21.50 6.85 25.65 0.18 21.67 15 12 O -0.58 -37.44 11.88 -4.67 -0.06 -37.50 15 13 C -0.54 -30.17 8.85 23.66 0.21 -29.96 15 14 H 0.09 4.63 6.04 -2.91 -0.02 4.62 15 15 C 0.03 1.35 5.50 85.40 0.47 1.82 15 16 N -0.79 -46.11 11.73 21.89 0.26 -45.85 15 17 Si 0.99 38.97 29.56 68.60 2.03 41.00 15 18 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 19 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 20 H -0.25 -8.96 7.11 99.48 0.71 -8.26 15 21 H 0.05 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.07 2.58 7.76 -2.39 -0.02 2.57 15 23 H 0.07 3.52 5.85 -2.39 -0.01 3.50 15 24 H 0.17 3.95 8.06 -2.91 -0.02 3.92 15 25 H 0.26 2.43 8.06 -2.91 -0.02 2.40 15 26 H 0.16 4.22 8.06 -2.91 -0.02 4.20 15 27 H 0.15 5.65 6.21 -2.91 -0.02 5.63 15 28 H 0.28 14.77 8.29 -92.70 -0.77 14.00 15 Total: -1.00 -74.14 248.91 6.11 -68.03 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.19 Total: 16.60 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 2.77 Total: -36.34 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.26 Total: -45.85 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.14 Total: -43.43 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -74.14 6.11 -68.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259455522.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.355 kcal (2) G-P(sol) polarization free energy of solvation -74.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds