Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30998 * 1 3 3 Si 1.86803 * 119.99811 * 2 1 4 4 H 1.48496 * 109.47115 * 264.84156 * 3 2 1 5 5 H 1.48505 * 109.47250 * 24.83962 * 3 2 1 6 6 H 1.48497 * 109.46882 * 144.83850 * 3 2 1 7 7 C 1.39777 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99822 * 352.49989 * 7 2 1 9 9 C 1.40610 * 120.00182 * 172.50727 * 7 2 1 10 10 C 1.47104 * 127.45629 * 323.67223 * 9 7 2 11 11 C 1.34054 * 106.31598 * 179.97438 * 10 9 7 12 12 O 1.34280 * 110.10800 * 359.97438 * 11 10 9 13 13 C 1.34523 * 110.99920 * 0.02562 * 12 11 10 14 14 C 1.46714 * 126.25446 * 179.97438 * 13 12 11 15 15 C 1.40240 * 120.13389 * 172.72068 * 14 13 12 16 16 C 1.37600 * 119.85575 * 179.72127 * 15 14 13 17 17 C 1.39085 * 120.14102 * 0.55405 * 16 15 14 18 18 O 1.35770 * 119.86654 * 179.73737 * 17 16 15 19 19 C 1.39085 * 120.27416 * 359.72196 * 17 16 15 20 20 C 1.37602 * 120.13837 * 359.97438 * 19 17 16 21 21 H 0.96998 * 120.00299 * 359.97438 * 1 2 3 22 22 H 1.07996 * 126.84621 * 359.95913 * 10 9 7 23 23 H 1.07997 * 124.94591 * 180.02562 * 11 10 9 24 24 H 1.08000 * 120.07135 * 359.97438 * 15 14 13 25 25 H 1.08005 * 119.93009 * 180.25509 * 16 15 14 26 26 H 0.96690 * 114.00364 * 269.98507 * 18 17 16 27 27 H 1.07998 * 119.93056 * 179.97438 * 19 17 16 28 28 H 1.07997 * 120.07542 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.6004 1.9835 -1.3944 5 1 1.3911 2.6818 0.5882 6 1 3.4827 1.4742 0.8063 7 6 2.0089 -1.2105 -0.0005 8 1 1.4759 -2.1419 0.1211 9 6 3.4060 -1.2155 -0.1593 10 6 4.2133 -0.3248 -1.0072 11 6 5.4895 -0.6991 -0.8387 12 8 5.5594 -1.7262 0.0233 13 6 4.3351 -2.0737 0.4595 14 6 4.0248 -3.1502 1.4068 15 6 2.7183 -3.3058 1.8923 16 6 2.4324 -4.3210 2.7761 17 6 3.4382 -5.1846 3.1968 18 8 3.1509 -6.1811 4.0731 19 6 4.7370 -5.0319 2.7234 20 6 5.0344 -4.0245 1.8345 21 1 -0.4850 0.8400 0.0004 22 1 3.8502 0.4718 -1.6396 23 1 6.3379 -0.2406 -1.3249 24 1 1.9375 -2.6328 1.5700 25 1 1.4258 -4.4445 3.1475 26 1 3.2499 -5.9292 5.0014 27 1 5.5138 -5.7054 3.0541 28 1 6.0432 -3.9071 1.4672 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259651865.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = -33.550321 kcal Electronic energy + Delta-G solvation = -15123.915122 eV Core-core repulsion = 12491.503654 eV Total energy + Delta-G solvation = -2632.411468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.51536 -40.27202 -37.51368 -35.87326 -33.46195 -31.99192 -31.80867 -29.22865 -27.07421 -23.78797 -23.43105 -22.01090 -20.79232 -19.65137 -19.05131 -18.05964 -16.75537 -16.47380 -16.31409 -16.16333 -15.80175 -15.34883 -14.60697 -14.21347 -14.02015 -13.49755 -13.36261 -13.16939 -12.85603 -12.79841 -12.46789 -12.18240 -11.80505 -11.30942 -11.00139 -10.20649 -10.09126 -9.88314 -8.81183 -8.53353 -6.38886 -0.02292 0.54124 1.18753 1.27022 1.42461 1.53160 1.84675 2.15720 2.49833 2.85854 3.13856 3.44451 3.98794 4.11033 4.17970 4.41209 4.55622 4.65737 4.78911 4.89137 5.08736 5.13451 5.28189 5.42128 5.57394 5.66050 5.77248 5.83651 6.04545 6.17850 6.47998 6.76830 6.86821 6.96965 8.26359 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.009048 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.311630 B = 3093.893683 C = 3888.054076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.046 3.954 3 Si 0.964 3.036 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.071 0.929 9 C 0.012 3.988 10 C -0.305 4.305 11 C 0.000 4.000 12 O -0.198 6.198 13 C -0.164 4.164 14 C 0.017 3.983 15 C -0.141 4.141 16 C -0.139 4.139 17 C 0.070 3.930 18 O -0.504 6.504 19 C -0.131 4.131 20 C -0.129 4.129 21 H 0.292 0.708 22 H 0.145 0.855 23 H 0.241 0.759 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.405 0.595 27 H 0.152 0.848 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -2.170 4.269 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.166 4.166 3 Si 0.787 3.213 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.088 0.912 9 C 0.009 3.991 10 C -0.325 4.325 11 C -0.067 4.067 12 O -0.097 6.097 13 C -0.211 4.211 14 C 0.016 3.984 15 C -0.159 4.159 16 C -0.157 4.157 17 C 0.026 3.974 18 O -0.316 6.316 19 C -0.150 4.150 20 C -0.147 4.147 21 H 0.102 0.898 22 H 0.163 0.837 23 H 0.257 0.743 24 H 0.151 0.849 25 H 0.152 0.848 26 H 0.263 0.737 27 H 0.170 0.830 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.441 -2.551 3.867 9.629 hybrid contribution -0.388 1.098 0.090 1.168 sum 8.054 -1.453 3.958 9.090 Atomic orbital electron populations 1.69727 1.08795 1.31124 1.39192 1.26661 0.95399 1.03801 0.90778 0.85526 0.78832 0.76477 0.80422 1.17295 1.20490 1.18421 1.18649 0.89870 0.94728 1.45473 0.91161 1.19656 0.93489 0.93301 0.92683 1.23080 0.94990 1.07131 1.07258 1.24336 0.99168 0.89528 0.93707 1.83594 1.30887 1.43887 1.51378 1.20667 0.81340 1.09058 1.10074 1.17877 0.93995 0.92308 0.94208 1.21770 0.96967 0.99027 0.98117 1.21388 1.00162 0.94747 0.99444 1.18505 0.92094 0.90395 0.96425 1.84722 1.90931 1.35746 1.20247 1.21384 0.96223 0.98407 0.98943 1.21199 0.98904 0.95254 0.99380 0.89824 0.83741 0.74268 0.84874 0.84824 0.73697 0.83004 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.91 13.94 21.80 0.30 -46.60 15 2 C 0.05 2.45 5.52 85.19 0.47 2.92 15 3 Si 0.96 41.76 24.89 68.60 1.71 43.47 15 4 H -0.25 -9.84 6.55 99.48 0.65 -9.19 15 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 15 6 H -0.26 -11.56 6.95 99.48 0.69 -10.87 15 7 C -0.46 -25.37 7.98 23.22 0.19 -25.18 15 8 H 0.07 4.21 6.19 -2.91 -0.02 4.19 15 9 C 0.01 0.61 5.28 -19.74 -0.10 0.50 15 10 C -0.30 -13.29 8.39 23.64 0.20 -13.09 15 11 C 0.00 0.00 11.96 66.87 0.80 0.80 15 12 O -0.20 -8.46 10.32 -4.42 -0.05 -8.50 15 13 C -0.16 -7.96 7.14 25.11 0.18 -7.78 15 14 C 0.02 0.74 5.88 -20.09 -0.12 0.62 15 15 C -0.14 -6.32 9.24 22.61 0.21 -6.11 15 16 C -0.14 -5.22 9.96 22.32 0.22 -5.00 15 17 C 0.07 2.31 6.72 22.68 0.15 2.46 15 18 O -0.50 -13.50 13.49 -90.98 -1.23 -14.72 15 19 C -0.13 -4.18 9.96 22.32 0.22 -3.95 15 20 C -0.13 -4.79 9.73 22.61 0.22 -4.57 15 21 H 0.29 14.39 8.30 -92.71 -0.77 13.62 15 22 H 0.15 5.89 5.76 -2.91 -0.02 5.87 15 23 H 0.24 5.71 8.06 -2.91 -0.02 5.69 15 24 H 0.13 6.76 4.30 -2.91 -0.01 6.75 15 25 H 0.13 4.53 8.06 -2.91 -0.02 4.51 15 26 H 0.40 6.46 9.06 -74.06 -0.67 5.79 15 27 H 0.15 3.75 8.06 -2.91 -0.02 3.73 15 28 H 0.13 4.47 7.94 -2.91 -0.02 4.44 15 Total: -1.00 -64.81 246.72 3.84 -60.96 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.47 Total: 23.77 kcal Atomic # 6 Polarization: -61.01 SS G_CDS: 2.64 Total: -58.38 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.30 Total: -46.60 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -1.27 Total: -23.23 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.71 Total: 43.47 kcal Total: -64.81 3.84 -60.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651865.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.415 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds