Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33793 * 125.91296 * 2 1 4 4 C 1.34392 * 111.29178 * 180.02562 * 3 2 1 5 5 C 1.35056 * 109.41686 * 359.97438 * 4 3 2 6 6 C 1.38844 * 125.90631 * 180.02562 * 2 1 3 7 7 C 1.41178 * 127.40290 * 359.97438 * 6 2 1 8 8 H 1.08000 * 119.99861 * 29.50769 * 7 6 2 9 9 C 1.39770 * 119.99923 * 209.50763 * 7 6 2 10 10 N 1.31002 * 120.00182 * 12.72479 * 9 7 6 11 11 Si 1.86806 * 119.99920 * 192.72192 * 9 7 6 12 12 H 1.48496 * 109.47200 * 90.00073 * 11 9 7 13 13 H 1.48506 * 109.47026 * 210.00281 * 11 9 7 14 14 H 1.48497 * 109.47031 * 329.99951 * 11 9 7 15 15 C 1.47850 * 110.21919 * 180.02562 * 5 4 3 16 16 C 1.46688 * 144.20892 * 180.02562 * 15 5 4 17 17 C 1.34421 * 106.01310 * 179.97438 * 16 15 5 18 18 O 1.34187 * 108.98253 * 359.97438 * 17 16 15 19 19 C 1.34135 * 110.67295 * 0.02562 * 18 17 16 20 20 C 1.51016 * 144.45547 * 179.71625 * 19 18 17 21 21 H 1.09007 * 109.46903 * 355.04091 * 1 2 3 22 22 H 1.08996 * 109.47563 * 115.03979 * 1 2 3 23 23 H 1.09002 * 109.46960 * 235.04766 * 1 2 3 24 24 H 0.96999 * 119.99666 * 180.02562 * 10 9 7 25 25 H 1.07999 * 126.99034 * 359.94491 * 16 15 5 26 26 H 1.08003 * 125.50748 * 180.02562 * 17 16 15 27 27 H 1.09000 * 110.23018 * 60.91936 * 20 19 18 28 28 H 1.08995 * 110.17415 * 299.03161 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2917 1.0836 0.0000 4 6 3.5921 0.7444 -0.0006 5 6 3.7050 -0.6015 -0.0004 6 6 2.3212 -1.1246 -0.0005 7 6 1.9158 -2.4769 -0.0006 8 1 0.9808 -2.7603 -0.4610 9 6 2.7243 -3.4490 0.5951 10 7 3.7220 -3.0896 1.3642 11 14 2.3822 -5.2607 0.2946 12 1 3.1407 -5.7165 -0.8979 13 1 2.8051 -6.0477 1.4809 14 1 0.9289 -5.4580 0.0622 15 6 5.1303 -0.9947 -0.0004 16 6 6.0491 -2.1381 -0.0006 17 6 7.2886 -1.6178 -0.0009 18 8 7.1999 -0.2789 -0.0015 19 6 5.9163 0.1107 -0.0009 20 6 4.9955 1.3076 0.0034 21 1 -0.3633 1.0239 0.0888 22 1 -0.3634 -0.4349 -0.9310 23 1 -0.3633 -0.5888 0.8423 24 1 4.2834 -3.7642 1.7773 25 1 5.7838 -3.1850 -0.0001 26 1 8.2073 -2.1857 -0.0016 27 1 5.1605 1.9133 -0.8877 28 1 5.1590 1.9044 0.9006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259888477.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = 63.508078 kcal Electronic energy + Delta-G solvation = -15646.182669 eV Core-core repulsion = 13017.979969 eV Total energy + Delta-G solvation = -2628.202700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.81785 -40.45974 -35.31081 -33.74697 -31.03753 -30.98451 -28.75582 -26.40499 -25.99932 -23.47079 -21.46403 -19.41248 -19.28546 -18.09536 -16.68108 -15.75696 -15.63110 -14.98930 -14.61540 -14.47968 -13.81436 -12.98027 -12.80520 -12.29288 -12.19579 -11.91350 -11.75726 -11.43570 -11.20150 -11.09827 -10.75806 -10.45051 -10.03794 -9.75227 -9.34737 -9.04965 -8.07781 -7.23161 -6.76470 -6.53597 -4.19515 2.33573 2.84543 2.90409 3.02400 3.14107 3.17441 3.59570 4.00282 4.07381 4.42720 5.24397 5.35455 5.64967 5.78840 5.91526 5.93789 5.97116 6.23408 6.43349 6.54891 6.60783 6.66754 6.82599 7.12587 7.23471 7.24609 7.42467 7.62073 7.78700 8.04299 8.39046 8.78466 8.92270 9.09682 10.44937 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.014413 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.284167 B = 1942.246629 C = 3274.338075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.207 4.207 3 O -0.167 6.167 4 C -0.086 4.086 5 C -0.116 4.116 6 C 0.077 3.923 7 C -0.458 4.458 8 H 0.076 0.924 9 C 0.078 3.922 10 N -0.796 5.796 11 Si 0.901 3.099 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.264 1.264 15 C -0.042 4.042 16 C -0.154 4.154 17 C -0.068 4.068 18 O -0.167 6.167 19 C -0.110 4.110 20 C 0.101 3.899 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.274 0.726 25 H 0.142 0.858 26 H 0.199 0.801 27 H 0.097 0.903 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 2.278 -1.644 4.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.254 4.254 3 O -0.068 6.068 4 C -0.137 4.137 5 C -0.119 4.119 6 C 0.074 3.926 7 C -0.489 4.489 8 H 0.094 0.906 9 C -0.138 4.138 10 N -0.423 5.423 11 Si 0.726 3.274 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.188 1.188 15 C -0.043 4.043 16 C -0.174 4.174 17 C -0.133 4.133 18 O -0.066 6.066 19 C -0.159 4.159 20 C 0.065 3.935 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.160 0.840 26 H 0.216 0.784 27 H 0.115 0.885 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.771 2.656 -1.489 4.847 hybrid contribution -0.012 -1.568 0.051 1.569 sum 3.760 1.088 -1.438 4.170 Atomic orbital electron populations 1.19535 0.86672 1.00164 1.01054 1.22208 0.91743 0.82688 1.28733 1.83087 1.12332 1.35645 1.75761 1.21424 0.84993 0.95075 1.12165 1.19943 0.91359 0.92311 1.08284 1.18403 0.87209 0.92881 0.94057 1.18626 1.05935 0.90152 1.34229 0.90589 1.25709 0.94073 1.00584 0.93405 1.69960 1.14501 1.35362 1.22436 0.86435 0.79801 0.82708 0.78423 1.19678 1.20568 1.18824 1.20056 0.92165 0.91507 1.00570 1.22363 0.90732 0.99482 1.04816 1.23752 0.99319 0.79921 1.10357 1.83431 1.25422 1.23293 1.74434 1.21925 0.81902 0.98441 1.13663 1.17654 0.81991 0.90641 1.03253 0.93418 0.92851 0.91999 0.91572 0.84043 0.78425 0.88463 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.36 10.20 36.00 0.37 0.01 15 2 C -0.21 -5.26 7.47 -34.09 -0.25 -5.51 15 3 O -0.17 -4.18 10.51 6.82 0.07 -4.10 15 4 C -0.09 -2.08 8.40 -35.18 -0.30 -2.38 15 5 C -0.12 -3.13 6.18 -103.12 -0.64 -3.77 15 6 C 0.08 2.15 5.82 -104.58 -0.61 1.55 15 7 C -0.46 -12.62 9.14 -37.89 -0.35 -12.97 15 8 H 0.08 2.01 7.88 -52.49 -0.41 1.59 15 9 C 0.08 2.05 5.40 -17.33 -0.09 1.96 15 10 N -0.80 -21.28 9.43 55.54 0.52 -20.75 15 11 Si 0.90 19.44 29.58 -169.99 -5.03 14.42 15 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 13 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 14 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 15 C -0.04 -1.03 6.28 -103.48 -0.65 -1.68 15 16 C -0.15 -3.39 9.97 -37.52 -0.37 -3.77 15 17 C -0.07 -1.23 12.05 29.38 0.35 -0.88 15 18 O -0.17 -3.29 10.56 6.47 0.07 -3.22 15 19 C -0.11 -2.38 8.47 -35.08 -0.30 -2.68 15 20 C 0.10 1.94 6.75 -28.63 -0.19 1.75 15 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 24 H 0.27 6.76 8.30 -40.82 -0.34 6.42 15 25 H 0.14 3.10 7.39 -52.49 -0.39 2.71 15 26 H 0.20 2.55 8.06 -52.48 -0.42 2.13 15 27 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 28 H 0.10 1.61 8.14 -51.93 -0.42 1.19 15 LS Contribution 249.86 15.07 3.77 3.77 Total: -1.00 -31.33 249.86 -6.10 -37.43 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -2.47 Total: 0.83 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -3.03 Total: -28.37 kcal Atomic # 7 Polarization: -21.28 SS G_CDS: 0.52 Total: -20.75 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.14 Total: -7.32 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.33 -6.10 -37.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259888477.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.937 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds