Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33793 * 125.91296 * 2 1 4 4 C 1.34392 * 111.29178 * 180.02562 * 3 2 1 5 5 C 1.35056 * 109.41686 * 359.97438 * 4 3 2 6 6 C 1.38844 * 125.90631 * 180.02562 * 2 1 3 7 7 C 1.41178 * 127.40290 * 359.97438 * 6 2 1 8 8 H 1.08000 * 119.99861 * 29.50769 * 7 6 2 9 9 C 1.39770 * 119.99923 * 209.50763 * 7 6 2 10 10 N 1.31002 * 120.00182 * 12.72479 * 9 7 6 11 11 Si 1.86806 * 119.99920 * 192.72192 * 9 7 6 12 12 H 1.48496 * 109.47200 * 90.00073 * 11 9 7 13 13 H 1.48506 * 109.47026 * 210.00281 * 11 9 7 14 14 H 1.48497 * 109.47031 * 329.99951 * 11 9 7 15 15 C 1.47850 * 110.21919 * 180.02562 * 5 4 3 16 16 C 1.46688 * 144.20892 * 180.02562 * 15 5 4 17 17 C 1.34421 * 106.01310 * 179.97438 * 16 15 5 18 18 O 1.34187 * 108.98253 * 359.97438 * 17 16 15 19 19 C 1.34135 * 110.67295 * 0.02562 * 18 17 16 20 20 C 1.51016 * 144.45547 * 179.71625 * 19 18 17 21 21 H 1.09007 * 109.46903 * 355.04091 * 1 2 3 22 22 H 1.08996 * 109.47563 * 115.03979 * 1 2 3 23 23 H 1.09002 * 109.46960 * 235.04766 * 1 2 3 24 24 H 0.96999 * 119.99666 * 180.02562 * 10 9 7 25 25 H 1.07999 * 126.99034 * 359.94491 * 16 15 5 26 26 H 1.08003 * 125.50748 * 180.02562 * 17 16 15 27 27 H 1.09000 * 110.23018 * 60.91936 * 20 19 18 28 28 H 1.08995 * 110.17415 * 299.03161 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2917 1.0836 0.0000 4 6 3.5921 0.7444 -0.0006 5 6 3.7050 -0.6015 -0.0004 6 6 2.3212 -1.1246 -0.0005 7 6 1.9158 -2.4769 -0.0006 8 1 0.9808 -2.7603 -0.4610 9 6 2.7243 -3.4490 0.5951 10 7 3.7220 -3.0896 1.3642 11 14 2.3822 -5.2607 0.2946 12 1 3.1407 -5.7165 -0.8979 13 1 2.8051 -6.0477 1.4809 14 1 0.9289 -5.4580 0.0622 15 6 5.1303 -0.9947 -0.0004 16 6 6.0491 -2.1381 -0.0006 17 6 7.2886 -1.6178 -0.0009 18 8 7.1999 -0.2789 -0.0015 19 6 5.9163 0.1107 -0.0009 20 6 4.9955 1.3076 0.0034 21 1 -0.3633 1.0239 0.0888 22 1 -0.3634 -0.4349 -0.9310 23 1 -0.3633 -0.5888 0.8423 24 1 4.2834 -3.7642 1.7773 25 1 5.7838 -3.1850 -0.0001 26 1 8.2073 -2.1857 -0.0016 27 1 5.1605 1.9133 -0.8877 28 1 5.1590 1.9044 0.9006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259888477.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = 44.766806 kcal Electronic energy + Delta-G solvation = -15646.995352 eV Core-core repulsion = 13017.979969 eV Total energy + Delta-G solvation = -2629.015382 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.46842 -42.28506 -37.02188 -35.67797 -32.89219 -32.61535 -30.51042 -28.03448 -27.88267 -25.28461 -23.21407 -21.19893 -20.98827 -19.81580 -18.56767 -17.43834 -17.27922 -16.84210 -16.41475 -16.25916 -15.40749 -14.71941 -14.29505 -14.10438 -13.94339 -13.56899 -13.38879 -13.20822 -12.93368 -12.84943 -12.51743 -12.13082 -11.86320 -11.65346 -11.13136 -10.96049 -9.72416 -9.10503 -8.59237 -8.45954 -6.21969 0.67987 1.12359 1.28195 1.32064 1.36074 1.47466 1.75512 2.24235 2.32252 2.54797 3.35755 3.82860 4.00684 4.12165 4.25243 4.47098 4.53643 4.62883 4.85005 4.92387 4.95374 5.01006 5.20776 5.23883 5.39594 5.45385 5.63812 5.83234 5.93083 6.32379 6.42437 6.82343 6.95051 7.10973 8.52959 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.014413 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.284167 B = 1942.246629 C = 3274.338075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 C -0.219 4.219 3 O -0.172 6.172 4 C -0.091 4.091 5 C -0.162 4.162 6 C 0.026 3.974 7 C -0.494 4.494 8 H 0.072 0.928 9 C 0.036 3.964 10 N -0.820 5.820 11 Si 0.973 3.027 12 H -0.268 1.268 13 H -0.270 1.270 14 H -0.260 1.260 15 C -0.098 4.098 16 C -0.197 4.197 17 C -0.030 4.030 18 O -0.157 6.157 19 C -0.100 4.100 20 C 0.109 3.891 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.278 0.722 25 H 0.130 0.870 26 H 0.256 0.744 27 H 0.139 0.861 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 2.643 -1.786 5.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.267 4.267 3 O -0.073 6.073 4 C -0.142 4.142 5 C -0.165 4.165 6 C 0.024 3.976 7 C -0.526 4.526 8 H 0.090 0.910 9 C -0.178 4.178 10 N -0.447 5.447 11 Si 0.795 3.205 12 H -0.193 1.193 13 H -0.195 1.195 14 H -0.183 1.183 15 C -0.100 4.100 16 C -0.216 4.216 17 C -0.095 4.095 18 O -0.056 6.056 19 C -0.149 4.149 20 C 0.073 3.927 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.148 0.852 26 H 0.272 0.728 27 H 0.156 0.844 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.195 3.044 -1.631 6.238 hybrid contribution -0.402 -1.649 0.096 1.700 sum 4.792 1.395 -1.535 5.222 Atomic orbital electron populations 1.19644 0.83694 1.02084 1.01661 1.23050 0.93697 0.82418 1.27495 1.83083 1.12936 1.35475 1.75816 1.22430 0.86069 0.95210 1.10444 1.20486 0.92300 0.93997 1.09680 1.18993 0.88890 0.93977 0.95783 1.18851 1.06710 0.91116 1.35881 0.90980 1.26511 0.93686 1.04817 0.92746 1.70050 1.15090 1.36767 1.22815 0.85344 0.79722 0.76967 0.78473 1.19325 1.19503 1.18334 1.20431 0.91962 0.94002 1.03570 1.22446 0.92099 0.98855 1.08199 1.24673 0.99850 0.79138 1.05816 1.83488 1.24227 1.24028 1.73824 1.22331 0.82147 0.98428 1.12022 1.17901 0.78143 0.89954 1.06665 0.90619 0.91684 0.91926 0.91235 0.85224 0.72804 0.84351 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.58 10.20 71.23 0.73 0.14 15 2 C -0.22 -11.43 7.47 25.83 0.19 -11.24 15 3 O -0.17 -8.65 10.51 1.47 0.02 -8.64 15 4 C -0.09 -4.41 8.40 25.12 0.21 -4.19 15 5 C -0.16 -8.98 6.18 -18.89 -0.12 -9.09 15 6 C 0.03 1.51 5.82 -19.84 -0.12 1.40 15 7 C -0.49 -28.43 9.14 23.36 0.21 -28.22 15 8 H 0.07 3.99 7.88 -2.91 -0.02 3.96 15 9 C 0.04 1.94 5.40 85.19 0.46 2.40 15 10 N -0.82 -45.28 9.43 21.80 0.21 -45.07 15 11 Si 0.97 40.87 29.58 68.60 2.03 42.90 15 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 13 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 14 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 15 C -0.10 -4.90 6.28 -19.13 -0.12 -5.02 15 16 C -0.20 -8.60 9.97 23.61 0.24 -8.37 15 17 C -0.03 -0.98 12.05 66.95 0.81 -0.18 15 18 O -0.16 -5.71 10.56 0.25 0.00 -5.71 15 19 C -0.10 -4.13 8.47 25.18 0.21 -3.91 15 20 C 0.11 3.92 6.75 29.37 0.20 4.12 15 21 H 0.07 2.59 8.14 -2.38 -0.02 2.57 15 22 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.28 14.08 8.30 -92.71 -0.77 13.31 15 25 H 0.13 5.84 7.39 -2.91 -0.02 5.81 15 26 H 0.26 5.25 8.06 -2.91 -0.02 5.23 15 27 H 0.14 3.88 8.14 -2.39 -0.02 3.86 15 28 H 0.13 3.90 8.14 -2.39 -0.02 3.88 15 Total: -1.00 -71.70 249.86 6.34 -65.35 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.19 Total: 13.33 kcal Atomic # 6 Polarization: -65.07 SS G_CDS: 2.91 Total: -62.16 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.21 Total: -45.07 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.02 Total: -14.35 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -71.70 6.34 -65.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259888477.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.120 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds