Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 12 12 C 1.38221 * 120.01069 * 300.00108 * 11 9 7 13 13 C 1.38228 * 120.02433 * 179.97438 * 12 11 9 14 14 C 1.38266 * 120.05059 * 0.02562 * 13 12 11 15 15 C 1.38176 * 120.02484 * 359.97438 * 14 13 12 16 16 C 1.38433 * 120.01472 * 119.71887 * 11 9 7 17 17 F 1.35104 * 120.02574 * 0.02562 * 16 11 9 18 18 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 19 19 F 1.39905 * 109.47246 * 65.00398 * 18 9 7 20 20 F 1.39906 * 109.47177 * 184.99815 * 18 9 7 21 21 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.98917 * 359.95169 * 12 11 9 23 23 H 1.07998 * 119.97321 * 180.02562 * 13 12 11 24 24 H 1.07995 * 119.98744 * 179.97438 * 14 13 12 25 25 H 1.08000 * 120.01055 * 179.97438 * 15 14 13 26 26 H 1.09001 * 109.47630 * 305.00104 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 2.2304 -3.6446 0.0005 12 6 3.1345 -3.7812 -1.0360 13 6 4.0332 -4.8314 -1.0360 14 6 4.0285 -5.7467 0.0003 15 6 3.1256 -5.6122 1.0375 16 6 2.2287 -4.5571 1.0416 17 9 1.3488 -4.4216 2.0579 18 6 0.3719 -2.5804 -1.2489 19 9 1.1830 -2.6214 -2.3881 20 9 -0.4122 -3.7377 -1.1930 21 1 -0.4850 0.8400 -0.0004 22 1 3.1385 -3.0673 -1.8464 23 1 4.7395 -4.9371 -1.8461 24 1 4.7308 -6.5671 -0.0010 25 1 3.1218 -6.3275 1.8467 26 1 -0.2756 -1.7048 -1.2953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102930.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = -150.520696 kcal Electronic energy + Delta-G solvation = -16220.094264 eV Core-core repulsion = 13040.753840 eV Total energy + Delta-G solvation = -3179.340424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.83186 -49.57779 -47.59322 -39.83179 -36.09737 -33.37078 -31.33352 -29.66755 -26.83550 -24.47096 -23.46151 -21.82692 -18.94236 -18.64326 -17.98739 -17.78194 -17.24202 -16.68337 -16.55847 -16.40325 -15.90739 -15.07084 -14.58831 -14.35998 -14.10359 -13.99340 -13.83809 -13.42324 -13.13477 -12.86425 -12.75416 -12.50718 -12.24107 -12.01263 -11.52839 -11.15468 -10.73980 -9.74729 -9.45473 -8.33998 -6.48169 0.33390 0.42523 1.40368 1.42684 1.55085 2.34095 2.76257 2.93860 3.41636 3.47586 3.88184 3.94608 4.12229 4.20276 4.28708 4.49729 4.58918 4.77164 5.04491 5.17838 5.27054 5.37509 5.56446 5.59046 5.73591 5.93870 6.12793 6.58563 7.21930 8.73989 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.010635 C = 0.010029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.908787 B = 2632.110665 C = 2791.103735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.067 0.933 9 C 0.039 3.961 10 H 0.034 0.966 11 C -0.116 4.116 12 C -0.097 4.097 13 C -0.128 4.128 14 C -0.095 4.095 15 C -0.156 4.156 16 C 0.061 3.939 17 F -0.157 7.157 18 C 0.254 3.746 19 F -0.214 7.214 20 F -0.236 7.236 21 H 0.274 0.726 22 H 0.129 0.871 23 H 0.159 0.841 24 H 0.173 0.827 25 H 0.156 0.844 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 -7.540 -1.392 10.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.020 3.980 10 H 0.052 0.948 11 C -0.117 4.117 12 C -0.115 4.115 13 C -0.146 4.146 14 C -0.113 4.113 15 C -0.174 4.174 16 C 0.042 3.958 17 F -0.135 7.135 18 C 0.200 3.800 19 F -0.196 7.196 20 F -0.218 7.218 21 H 0.083 0.917 22 H 0.147 0.853 23 H 0.176 0.824 24 H 0.190 0.810 25 H 0.174 0.826 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.661 -7.443 -1.373 10.083 hybrid contribution -0.451 1.040 0.278 1.167 sum 6.210 -6.403 -1.095 8.987 Atomic orbital electron populations 1.69822 1.07371 1.28756 1.50151 1.25889 0.95885 1.03125 0.93391 0.85274 0.78966 0.78176 0.78000 1.18860 1.19859 1.20304 1.21172 0.93488 0.89203 1.51943 0.91461 1.18612 0.92966 0.93523 0.92928 0.94839 1.20278 0.99705 0.96162 0.95543 1.21323 0.94020 0.98864 0.97340 1.21594 0.98835 0.94081 1.00107 1.21382 0.97926 0.99735 0.92224 1.21383 0.96391 0.97374 1.02260 1.18056 0.92486 0.98505 0.86754 1.91396 1.67947 1.95889 1.58305 1.22577 0.87600 0.84958 0.84876 1.92758 1.75315 1.97047 1.54434 1.92820 1.76619 1.55501 1.96881 0.91652 0.85308 0.82363 0.80983 0.82605 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.62 11.29 21.45 0.24 -50.37 15 2 C 0.02 0.88 5.29 84.65 0.45 1.33 15 3 Si 0.97 41.75 29.54 68.60 2.03 43.78 15 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 15 7 C -0.52 -27.95 8.09 25.60 0.21 -27.74 15 8 H 0.07 3.57 7.60 -2.91 -0.02 3.55 15 9 C 0.04 2.02 2.16 -12.29 -0.03 2.00 15 10 H 0.03 1.93 7.13 -2.39 -0.02 1.91 15 11 C -0.12 -5.26 4.58 -19.82 -0.09 -5.35 15 12 C -0.10 -3.82 8.23 22.26 0.18 -3.64 15 13 C -0.13 -3.74 10.04 22.27 0.22 -3.51 15 14 C -0.10 -2.43 10.04 22.26 0.22 -2.21 15 15 C -0.16 -4.81 10.03 22.31 0.22 -4.58 15 16 C 0.06 2.52 7.25 22.37 0.16 2.69 15 17 F -0.16 -6.97 16.20 44.97 0.73 -6.24 15 18 C 0.25 12.85 4.67 71.98 0.34 13.19 15 19 F -0.21 -10.31 14.31 44.97 0.64 -9.67 15 20 F -0.24 -11.73 17.16 44.97 0.77 -10.96 15 21 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 22 H 0.13 5.28 6.36 -2.91 -0.02 5.26 15 23 H 0.16 3.37 8.06 -2.91 -0.02 3.35 15 24 H 0.17 2.74 8.06 -2.91 -0.02 2.72 15 25 H 0.16 3.78 8.06 -2.91 -0.02 3.76 15 26 H 0.12 6.64 5.95 -2.39 -0.01 6.62 15 Total: -1.00 -60.35 239.72 7.51 -52.84 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.21 Total: 8.44 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 1.89 Total: -27.82 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.24 Total: -50.37 kcal Atomic # 9 Polarization: -29.01 SS G_CDS: 2.14 Total: -26.87 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -60.35 7.51 -52.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102930.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.679 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds