Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99512 * 2 1 4 4 H 1.48501 * 109.46738 * 270.00025 * 3 2 1 5 5 H 1.48496 * 109.47220 * 29.99393 * 3 2 1 6 6 H 1.48492 * 109.47272 * 150.00250 * 3 2 1 7 7 C 1.37875 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00051 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00176 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47016 * 59.99358 * 9 7 2 11 11 C 1.50699 * 109.47143 * 179.97438 * 9 7 2 12 12 C 1.38243 * 119.97739 * 59.71971 * 11 9 7 13 13 C 1.38196 * 120.02777 * 179.76810 * 12 11 9 14 14 C 1.38465 * 119.97002 * 0.50898 * 13 12 11 15 15 F 1.35096 * 120.02276 * 179.76882 * 14 13 12 16 16 C 1.38461 * 119.95223 * 359.74472 * 14 13 12 17 17 C 1.38198 * 119.97193 * 359.97438 * 16 14 13 18 18 C 1.53006 * 109.46610 * 299.99403 * 9 7 2 19 19 F 1.39897 * 109.47129 * 304.99921 * 18 9 7 20 20 F 1.39903 * 109.46814 * 65.00413 * 18 9 7 21 21 H 0.96993 * 120.00694 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.98574 * 0.02562 * 12 11 9 23 23 H 1.07997 * 120.01485 * 180.25208 * 13 12 11 24 24 H 1.07990 * 120.01455 * 179.97438 * 16 14 13 25 25 H 1.08002 * 119.98954 * 180.02562 * 17 16 14 26 26 H 1.09001 * 109.47002 * 184.99869 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 6 2.2306 -3.6445 0.0005 12 6 3.1384 -3.7771 1.0346 13 6 4.0338 -4.8297 1.0381 14 6 4.0284 -5.7458 -0.0001 15 9 4.9064 -6.7726 -0.0001 16 6 3.1222 -5.6091 -1.0380 17 6 2.2239 -4.5589 -1.0363 18 6 0.3712 -2.5799 1.2496 19 9 1.1606 -2.3914 2.3891 20 9 -0.6112 -1.5855 1.1930 21 1 -0.4851 0.8399 0.0004 22 1 3.1451 -3.0600 1.8423 23 1 4.7402 -4.9354 1.8482 24 1 3.1174 -6.3228 -1.8484 25 1 1.5166 -4.4522 -1.8456 26 1 -0.1053 -3.5592 1.2956 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260200749.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -126.242323 kcal Electronic energy + Delta-G solvation = -15964.669316 eV Core-core repulsion = 12786.381681 eV Total energy + Delta-G solvation = -3178.287635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.80188 -49.11540 -47.06362 -39.97857 -35.63474 -33.18134 -31.96260 -29.19200 -26.68646 -24.09727 -23.75841 -21.81367 -18.68657 -18.52331 -17.80510 -17.51193 -17.11037 -16.59121 -16.47702 -16.30493 -15.52346 -14.91739 -14.47718 -14.27192 -14.10475 -13.83917 -13.43744 -13.27770 -13.10505 -12.82365 -12.67168 -12.40157 -12.08954 -11.70753 -11.46711 -10.93107 -10.50399 -9.93469 -9.34461 -8.02076 -6.22394 0.29557 0.40671 1.41732 1.44087 1.53095 2.41891 2.75602 3.15386 3.37425 3.55147 3.90131 4.00176 4.06305 4.28327 4.41438 4.56531 4.61869 4.79281 5.06152 5.22456 5.27573 5.34006 5.46525 5.74010 5.89612 6.03141 6.18573 6.75077 7.42072 8.89552 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.033968 B = 0.008715 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.115911 B = 3212.205381 C = 3510.358348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.035 3.965 10 H 0.047 0.953 11 C -0.076 4.076 12 C -0.091 4.091 13 C -0.155 4.155 14 C 0.070 3.930 15 F -0.147 7.147 16 C -0.147 4.147 17 C -0.095 4.095 18 C 0.260 3.740 19 F -0.226 7.226 20 F -0.184 7.184 21 H 0.257 0.743 22 H 0.127 0.873 23 H 0.148 0.852 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -8.957 -0.263 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.073 0.927 9 C 0.016 3.984 10 H 0.065 0.935 11 C -0.076 4.076 12 C -0.109 4.109 13 C -0.173 4.173 14 C 0.051 3.949 15 F -0.126 7.126 16 C -0.166 4.166 17 C -0.113 4.113 18 C 0.206 3.794 19 F -0.207 7.207 20 F -0.165 7.165 21 H 0.067 0.933 22 H 0.145 0.855 23 H 0.166 0.834 24 H 0.176 0.824 25 H 0.162 0.838 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.535 -8.842 -0.239 9.525 hybrid contribution 0.365 1.040 0.180 1.117 sum 3.901 -7.802 -0.059 8.723 Atomic orbital electron populations 1.70565 1.06497 1.26607 1.47244 1.25747 0.95799 1.02334 0.94650 0.85649 0.78671 0.79679 0.78243 1.19842 1.21160 1.19683 1.21021 0.92922 0.90007 1.53749 0.92657 1.18780 0.93133 0.92836 0.93697 0.93534 1.20162 0.97197 0.95211 0.95074 1.21144 0.93959 0.96896 0.98862 1.21270 1.01495 0.95178 0.99386 1.17784 0.91827 0.87546 0.97704 1.91449 1.67362 1.57042 1.96711 1.21272 0.95957 1.00364 0.99004 1.21129 0.98930 0.93064 0.98162 1.22450 0.82981 0.89199 0.84770 1.92775 1.76542 1.96662 1.54759 1.93116 1.62932 1.64238 1.96229 0.93284 0.85522 0.83430 0.82409 0.83828 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.03 9.57 21.45 0.21 -48.82 15 2 C 0.02 0.97 5.26 84.65 0.45 1.41 15 3 Si 0.95 43.31 29.54 68.60 2.03 45.34 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 15 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 7 C -0.54 -28.41 7.85 25.60 0.20 -28.21 15 8 H 0.06 2.94 7.59 -2.91 -0.02 2.91 15 9 C 0.03 1.60 2.33 -12.28 -0.03 1.57 15 10 H 0.05 2.26 7.87 -2.39 -0.02 2.24 15 11 C -0.08 -2.95 4.74 -19.86 -0.09 -3.05 15 12 C -0.09 -3.35 8.47 22.26 0.19 -3.16 15 13 C -0.15 -4.84 10.03 22.31 0.22 -4.61 15 14 C 0.07 2.11 7.30 22.38 0.16 2.27 15 15 F -0.15 -4.21 17.27 44.97 0.78 -3.43 15 16 C -0.15 -4.14 10.03 22.31 0.22 -3.92 15 17 C -0.09 -3.05 9.67 22.26 0.22 -2.84 15 18 C 0.26 11.88 4.74 71.98 0.34 12.22 15 19 F -0.23 -10.54 14.62 44.97 0.66 -9.88 15 20 F -0.18 -9.70 13.20 44.97 0.59 -9.11 15 21 H 0.26 13.96 8.31 -92.71 -0.77 13.19 15 22 H 0.13 5.04 6.46 -2.91 -0.02 5.02 15 23 H 0.15 3.88 8.06 -2.91 -0.02 3.86 15 24 H 0.16 3.41 8.06 -2.92 -0.02 3.38 15 25 H 0.14 4.10 7.94 -2.91 -0.02 4.08 15 26 H 0.09 3.49 8.14 -2.39 -0.02 3.47 15 Total: -1.00 -58.44 238.37 7.34 -51.10 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.20 Total: 3.12 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 1.88 Total: -28.30 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.21 Total: -48.82 kcal Atomic # 9 Polarization: -24.46 SS G_CDS: 2.03 Total: -22.43 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -58.44 7.34 -51.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260200749.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.147 kcal (2) G-P(sol) polarization free energy of solvation -58.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds