Wall clock time and date at job start Mon Mar 30 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86789 * 119.99765 * 2 1 4 4 H 1.48507 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47605 * 300.00073 * 3 2 1 6 6 H 1.48501 * 109.47509 * 60.00405 * 3 2 1 7 7 C 1.39937 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99389 * 193.10839 * 7 2 1 9 9 C 1.41408 * 120.00024 * 13.10370 * 7 2 1 10 10 C 1.40773 * 120.21505 * 27.65368 * 9 7 2 11 11 C 1.37633 * 119.86177 * 180.02562 * 10 9 7 12 12 C 1.38553 * 120.30596 * 359.96836 * 11 10 9 13 13 C 1.39153 * 120.44314 * 0.02562 * 12 11 10 14 14 O 1.35872 * 119.93717 * 179.97438 * 13 12 11 15 15 C 1.36151 * 118.00102 * 77.57740 * 14 13 12 16 16 C 1.41661 * 126.62309 * 356.81770 * 15 14 13 17 17 C 1.34507 * 106.86211 * 179.86545 * 16 15 14 18 18 O 1.34274 * 108.52809 * 0.39852 * 17 16 15 19 19 C 1.34553 * 109.51810 * 359.73764 * 18 17 16 20 20 C 1.38174 * 120.12711 * 0.02562 * 13 12 11 21 21 H 0.96999 * 120.00006 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.06742 * 0.04002 * 10 9 7 23 23 H 1.07997 * 119.84903 * 179.97438 * 11 10 9 24 24 H 1.08000 * 119.77709 * 180.27965 * 12 11 10 25 25 H 1.07997 * 126.56732 * 0.02562 * 16 15 14 26 26 H 1.08002 * 125.73161 * 180.10217 * 17 16 15 27 27 H 1.07997 * 125.82992 * 180.02562 * 19 18 17 28 28 H 1.07999 * 120.15260 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0669 -1.2241 0.2116 9 6 1.3286 -2.4205 -0.2787 10 6 0.1780 -2.4158 -1.0899 11 6 -0.4779 -3.5963 -1.3555 12 6 -0.0108 -4.7896 -0.8287 13 6 1.1253 -4.8089 -0.0255 14 8 1.5742 -5.9849 0.4861 15 6 2.2606 -6.8210 -0.3405 16 6 2.5123 -6.6259 -1.7209 17 6 3.2228 -7.6875 -2.1418 18 8 3.4083 -8.5164 -1.1019 19 6 2.8274 -7.9978 -0.0045 20 6 1.7973 -3.6343 0.2537 21 1 -0.4850 0.8400 0.0004 22 1 -0.1890 -1.4880 -1.5030 23 1 -1.3608 -3.5924 -1.9775 24 1 -0.5295 -5.7115 -1.0464 25 1 2.1965 -5.7845 -2.3198 26 1 3.5797 -7.8486 -3.1484 27 1 2.8171 -8.4470 0.9775 28 1 2.6789 -3.6487 0.8774 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260302307.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:30 Heat of formation + Delta-G solvation = -11.726328 kcal Electronic energy + Delta-G solvation = -14917.104088 eV Core-core repulsion = 12285.638980 eV Total energy + Delta-G solvation = -2631.465108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.50158 -40.68241 -38.43214 -35.42392 -33.25213 -31.90691 -31.00238 -29.58962 -27.31963 -23.92713 -22.92303 -22.40145 -21.88185 -19.97351 -18.70961 -17.50196 -17.20154 -16.82854 -16.55617 -16.26392 -16.03050 -15.03281 -14.89773 -14.28149 -14.02480 -13.79370 -13.49001 -13.07393 -12.96425 -12.81267 -12.42036 -12.20059 -11.91584 -11.42389 -11.12888 -10.32816 -9.56536 -9.37865 -9.12182 -8.68907 -6.48007 0.66039 0.79237 0.84685 1.38579 1.46063 1.53750 1.63535 2.13029 2.19469 2.50027 2.77761 3.55531 3.85283 4.21732 4.32265 4.46408 4.49400 4.77273 4.88883 4.95464 4.99834 5.13822 5.24872 5.26225 5.46675 5.78152 5.86129 5.95982 6.01120 6.13340 6.48770 6.72259 6.84292 6.96609 8.29071 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.006151 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.978086 B = 4551.166522 C = 4812.403430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.094 3.906 10 C -0.176 4.176 11 C -0.092 4.092 12 C -0.244 4.244 13 C 0.106 3.894 14 O -0.267 6.267 15 C -0.008 4.008 16 C -0.282 4.282 17 C 0.002 3.998 18 O -0.165 6.165 19 C -0.080 4.080 20 C -0.247 4.247 21 H 0.291 0.709 22 H 0.114 0.886 23 H 0.127 0.873 24 H 0.113 0.887 25 H 0.139 0.861 26 H 0.252 0.748 27 H 0.235 0.765 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -8.002 -4.043 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.092 3.908 10 C -0.195 4.195 11 C -0.110 4.110 12 C -0.264 4.264 13 C 0.065 3.935 14 O -0.180 6.180 15 C -0.052 4.052 16 C -0.302 4.302 17 C -0.065 4.065 18 O -0.062 6.062 19 C -0.147 4.147 20 C -0.267 4.267 21 H 0.102 0.898 22 H 0.132 0.868 23 H 0.144 0.856 24 H 0.131 0.869 25 H 0.157 0.843 26 H 0.268 0.732 27 H 0.251 0.749 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.779 -8.162 -3.838 9.778 hybrid contribution -0.113 1.202 0.159 1.218 sum 3.665 -6.959 -3.679 8.683 Atomic orbital electron populations 1.69838 1.08893 1.30806 1.35546 1.26777 0.95642 1.04504 0.91014 0.85066 0.79186 0.75774 0.79129 1.18326 1.18460 1.19001 1.19842 0.96825 0.91691 1.44200 0.90627 1.17780 0.92160 0.92073 0.88798 1.21455 0.99069 0.97343 1.01659 1.20881 0.99104 0.91887 0.99136 1.20808 1.00475 0.98277 1.06801 1.18460 0.94439 0.82680 0.97918 1.84146 1.68927 1.28220 1.36734 1.19852 1.00335 0.93921 0.91067 1.22126 1.09163 1.03906 0.95017 1.24552 0.99790 0.88565 0.93597 1.84176 1.61194 1.43874 1.16914 1.23390 1.04090 0.94652 0.92565 1.21163 1.03943 0.93001 1.08563 0.89798 0.86827 0.85554 0.86868 0.84324 0.73167 0.74870 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.42 10.89 21.83 0.24 -42.18 15 2 C 0.04 1.77 5.21 85.25 0.44 2.22 15 3 Si 0.99 37.65 29.58 68.60 2.03 39.68 15 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 5 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 6 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 7 C -0.50 -26.94 9.06 23.46 0.21 -26.73 15 8 H 0.08 4.00 7.88 -2.91 -0.02 3.97 15 9 C 0.09 5.19 5.55 -21.30 -0.12 5.07 15 10 C -0.18 -9.17 8.66 22.75 0.20 -8.98 15 11 C -0.09 -4.23 10.02 22.20 0.22 -4.01 15 12 C -0.24 -11.15 9.50 22.56 0.21 -10.93 15 13 C 0.11 5.16 5.02 22.47 0.11 5.27 15 14 O -0.27 -11.95 10.06 -38.40 -0.39 -12.33 15 15 C -0.01 -0.31 6.95 22.34 0.16 -0.15 15 16 C -0.28 -9.58 9.86 22.26 0.22 -9.36 15 17 C 0.00 0.06 12.08 66.97 0.81 0.87 15 18 O -0.17 -4.35 10.66 -4.65 -0.05 -4.40 15 19 C -0.08 -2.35 12.11 67.04 0.81 -1.53 15 20 C -0.25 -13.02 9.73 22.83 0.22 -12.80 15 21 H 0.29 13.38 8.30 -92.71 -0.77 12.61 15 22 H 0.11 6.07 6.22 -2.91 -0.02 6.05 15 23 H 0.13 4.94 8.06 -2.91 -0.02 4.92 15 24 H 0.11 4.68 8.06 -2.91 -0.02 4.66 15 25 H 0.14 5.09 7.71 -2.91 -0.02 5.06 15 26 H 0.25 3.44 8.06 -2.91 -0.02 3.42 15 27 H 0.24 5.12 8.06 -2.91 -0.02 5.09 15 28 H 0.09 4.90 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -62.85 256.66 6.51 -56.35 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 1.17 Total: 23.94 kcal Atomic # 6 Polarization: -64.55 SS G_CDS: 3.50 Total: -61.05 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.24 Total: -42.18 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.44 Total: -16.73 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -62.85 6.51 -56.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260302307.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.619 kcal (2) G-P(sol) polarization free energy of solvation -62.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds