Wall clock time and date at job start Mon Mar 30 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47119 * 2 1 4 4 C 1.50697 * 109.47767 * 239.99612 * 2 1 3 5 5 H 1.08002 * 119.99989 * 240.00526 * 4 2 1 6 6 C 1.37877 * 119.99999 * 59.99798 * 4 2 1 7 7 N 1.31519 * 119.99614 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00095 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47487 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47185 * 120.00321 * 8 6 4 11 11 H 1.48502 * 109.47293 * 239.99950 * 8 6 4 12 12 C 1.50702 * 109.47010 * 119.99353 * 2 1 3 13 13 C 1.38250 * 119.97690 * 60.00702 * 12 2 1 14 14 C 1.38357 * 120.02365 * 180.23584 * 13 12 2 15 15 F 1.35102 * 120.00806 * 179.74409 * 14 13 12 16 16 C 1.38688 * 119.98106 * 359.48476 * 14 13 12 17 17 F 1.35103 * 120.02146 * 180.26022 * 16 14 13 18 18 C 1.38355 * 119.95301 * 0.50939 * 16 14 13 19 19 C 1.38423 * 119.97931 * 239.97921 * 12 2 1 20 20 F 1.35092 * 119.99207 * 0.02562 * 19 12 2 21 21 H 1.08991 * 109.47421 * 300.00351 * 1 2 3 22 22 H 1.09000 * 109.46966 * 60.00686 * 1 2 3 23 23 H 1.09005 * 109.46662 * 179.97438 * 1 2 3 24 24 H 0.97004 * 119.99371 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.98396 * 359.94940 * 13 12 2 26 26 H 1.08000 * 120.00737 * 179.76581 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3217 -1.1205 -4.0077 9 1 3.1459 -2.2879 -3.6035 10 1 1.1664 -1.5869 -4.8160 11 1 3.1469 -0.1876 -4.8163 12 6 2.0323 -0.7103 1.2306 13 6 1.6981 -2.0339 1.4489 14 6 2.1547 -2.6855 2.5808 15 9 1.8237 -3.9775 2.7965 16 6 2.9567 -2.0137 3.4912 17 9 3.4074 -2.6507 4.5941 18 6 3.2908 -0.6891 3.2718 19 6 2.8284 -0.0372 2.1412 20 9 3.1544 1.2562 1.9267 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7097 1.1615 -3.4845 25 1 1.0766 -2.5580 0.7380 26 1 3.9121 -0.1639 3.9821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260426739.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:15 Heat of formation + Delta-G solvation = -123.619405 kcal Electronic energy + Delta-G solvation = -15700.242491 eV Core-core repulsion = 12522.068594 eV Total energy + Delta-G solvation = -3178.173897 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.20952 -48.49546 -48.28146 -38.52345 -34.48935 -31.58068 -29.98335 -28.19337 -25.27974 -23.57204 -22.42818 -20.19184 -17.94162 -17.51842 -16.89075 -16.24132 -16.00747 -15.37487 -14.99991 -14.70342 -14.65990 -14.28913 -13.82806 -13.70294 -12.93282 -12.35534 -12.10912 -11.75116 -11.44037 -11.26880 -11.01083 -10.76436 -10.40634 -10.27130 -9.75083 -9.20313 -8.65492 -8.50842 -8.00544 -6.14315 -4.22927 1.17559 1.26187 3.22694 3.31408 3.34976 3.62669 3.98467 4.32962 4.36716 4.79015 4.86895 5.17384 5.20831 5.41829 5.83903 6.13493 6.20462 6.42816 6.49768 6.73237 6.87184 7.00055 7.16034 7.53701 7.73083 7.92039 8.17890 8.78983 9.42969 10.91445 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.008387 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.013560 B = 3337.749144 C = 3732.123919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.069 3.931 3 H 0.049 0.951 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.043 4.043 13 C -0.092 4.092 14 C 0.054 3.946 15 F -0.134 7.134 16 C 0.064 3.936 17 F -0.133 7.133 18 C -0.167 4.167 19 C 0.108 3.892 20 F -0.126 7.126 21 H 0.012 0.988 22 H 0.091 0.909 23 H 0.031 0.969 24 H 0.263 0.737 25 H 0.157 0.843 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -3.181 8.582 9.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 H 0.067 0.933 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.044 4.044 13 C -0.110 4.110 14 C 0.034 3.966 15 F -0.112 7.112 16 C 0.044 3.956 17 F -0.112 7.112 18 C -0.187 4.187 19 C 0.088 3.912 20 F -0.105 7.105 21 H 0.031 0.969 22 H 0.109 0.891 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.669 -3.087 8.486 9.183 hybrid contribution 0.478 -0.557 -0.604 0.951 sum 2.147 -3.644 7.883 8.946 Atomic orbital electron populations 1.21817 0.96770 0.99663 1.00871 1.17972 0.93474 0.96148 0.87376 0.93326 1.21074 1.32002 1.12742 0.89550 0.92119 1.24947 0.94794 0.94904 0.99058 1.69889 1.36170 1.22593 1.23673 0.86467 0.78729 0.79724 0.82739 1.19642 1.20854 1.20866 1.20791 0.93479 0.93458 0.96709 1.20929 1.00544 0.94451 0.95118 1.17731 1.01873 0.79969 0.97073 1.91488 1.91085 1.33831 1.94814 1.17072 1.01258 0.91295 0.85960 1.91488 1.87658 1.81628 1.50408 1.20785 1.04952 0.93350 0.99574 1.17267 0.99272 0.79772 0.94901 1.91501 1.90816 1.33543 1.94593 0.96915 0.89082 0.94949 0.92731 0.82583 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.78 37.16 0.33 -2.67 15 2 C 0.07 1.61 2.46 -92.93 -0.23 1.39 15 3 H 0.05 1.25 7.12 -51.93 -0.37 0.88 15 4 C -0.52 -13.25 8.24 -34.44 -0.28 -13.54 15 5 H 0.06 1.55 7.60 -52.49 -0.40 1.15 15 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.02 11.32 55.43 0.63 -23.39 15 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 15 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 12 C -0.04 -0.87 4.74 -104.55 -0.50 -1.36 15 13 C -0.09 -1.68 8.68 -39.53 -0.34 -2.02 15 14 C 0.05 0.92 7.31 -39.37 -0.29 0.63 15 15 F -0.13 -2.26 17.18 2.25 0.04 -2.22 15 16 C 0.06 1.04 7.31 -39.37 -0.29 0.76 15 17 F -0.13 -2.10 17.18 2.25 0.04 -2.06 15 18 C -0.17 -2.61 10.00 -39.46 -0.39 -3.01 15 19 C 0.11 1.97 7.24 -39.43 -0.29 1.69 15 20 F -0.13 -2.41 16.19 2.25 0.04 -2.37 15 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 22 H 0.09 2.26 6.07 -51.93 -0.32 1.95 15 23 H 0.03 0.67 7.39 -51.93 -0.38 0.29 15 24 H 0.26 6.79 8.31 -40.82 -0.34 6.45 15 25 H 0.16 2.80 7.57 -52.49 -0.40 2.40 15 26 H 0.15 1.90 8.06 -52.49 -0.42 1.47 15 LS Contribution 243.06 15.07 3.66 3.66 Total: -1.00 -26.04 243.06 -4.84 -30.88 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -1.84 Total: -3.34 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -2.38 Total: -16.52 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.63 Total: -23.39 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.11 Total: -6.65 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.04 -4.84 -30.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260426739.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.740 kcal (2) G-P(sol) polarization free energy of solvation -26.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds